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  1. The increased growth rate of young animals can lead to higher lactation performance in adult goats; however, the effects of the ruminal microbiome on the growth of young goats, and the contribution of the earl...

    Authors: Dangdang Wang, Luyu Chen, Guangfu Tang, Junjian Yu, Jie Chen, Zongjun Li, Yangchun Cao, Xinjian Lei, Lu Deng, Shengru Wu, Le Luo Guan and Junhu Yao
    Citation: Microbiome 2023 11:215
    Content type: Research Published on:

  2. Plant-beneficial bacterial inoculants are of great interest in agriculture as they have the potential to promote plant growth and health. However, the inoculation of the rhizosphere microbiome often results in...

    Authors: Daniel Garrido-Sanz, Senka Čaušević, Jordan Vacheron, Clara M. Heiman, Vladimir Sentchilo, Jan Roelof van der Meer and Christoph Keel
    Citation: Microbiome 2023 11:214
    Content type: Research Published on:

  4. Aging-related fertility decline is a prevalent concern globally. Male reproductive system aging is mainly characterized by a decrease in sperm quality and fertility. While it is known that intestinal physiolog...

    Authors: Zirun Jin, Yuzhuo Yang, Yalei Cao, Qi Wen, Yu Xi, Jianxing Cheng, Qiancheng Zhao, Jiaming Weng, Kai Hong, Hui Jiang, Jing Hang and Zhe Zhang
    Citation: Microbiome 2023 11:212
    Content type: Research Published on:

  5. Ocean warming is a leading cause of increasing episodes of coral bleaching, the dissociation between coral hosts and their dinoflagellate algal symbionts in the family Symbiodiniaceae. While the diversity and ...

    Authors: Chenying Wang, Xinqing Zheng, Hagit Kvitt, Huaxia Sheng, Danye Sun, Gaofeng Niu, Dan Tchernov and Tuo Shi
    Citation: Microbiome 2023 11:211
    Content type: Research Published on:

  6. The terrestrial subsurface is home to a significant proportion of the Earth’s microbial biomass. Our understanding about terrestrial subsurface microbiomes is almost exclusively derived from groundwater and po...

    Authors: Carl-Eric Wegner, Raphaela Stahl, Irina Velsko, Alex Hübner, Zandra Fagernäs, Christina Warinner, Robert Lehmann, Thomas Ritschel, Kai U. Totsche and Kirsten Küsel
    Citation: Microbiome 2023 11:210
    Content type: Research Published on:

  7. The existence of the gut microbiota produces an “individual drug reaction.” As members of the intestinal microbiota, probiotics, although they have prebiotic functions, may accelerate the degradation of drugs,...

    Authors: Siyuan Shen, Jun Wang, Chenchen Ma, Yanni Chen, Hao Ding and Jiachao Zhang
    Citation: Microbiome 2023 11:209
    Content type: Research Published on:

  8. The gut microbiota contributes to macrophage-mediated inflammation in adipose tissue with consumption of an obesogenic diet, thus driving the development of metabolic syndrome. There is a need to identify and ...

    Authors: N. K. Newman, Y. Zhang, J. Padiadpu, C. L. Miranda, A. A. Magana, C. P. Wong, K. A. Hioki, J. W. Pederson, Z. Li, M. Gurung, A. M. Bruce, K. Brown, G. Bobe, T. J. Sharpton, N. Shulzhenko, C. S. Maier…
    Citation: Microbiome 2023 11:208
    Content type: Research Published on:

  9. Early life plays a vital role in the development of the gut microbiome and subsequent health. While many factors that shape the gut microbiome have been described, including delivery mode, breastfeeding, and a...

    Authors: Molly Mills, Seungjun Lee, Barbara A. Piperata, Rebecca Garabed, Boseung Choi and Jiyoung Lee
    Citation: Microbiome 2023 11:207
    Content type: Research Published on:

  10. Authors: Yacine Amar, Danielle Rogner, Rafaela L. Silva, Bärbel U. Foesel, Minhaz Ud‑Dean, Ilias Lagkouvardos, Susanne A. Steimle‑Grauer, Sebastian Niedermeier, Susanne Kublik, Manja Jargosch, Matthias Heinig, Jenny Thomas, Stefanie Eyerich, Jakob D. Wikström, Michael Schloter, Kilian Eyerich…
    Citation: Microbiome 2023 11:206
    Content type: Correction Published on:

    The original article was published in Microbiome 2023 11:162

  11. In the last few years, considerable attention has been focused on the plastic-degrading capability of insects and their gut microbiota in order to develop novel, effective, and green strategies for plastic was...

    Authors: Francesca De Filippis, Marco Bonelli, Daniele Bruno, Giuseppina Sequino, Aurora Montali, Marcella Reguzzoni, Edoardo Pasolli, Davide Savy, Silvana Cangemi, Vincenza Cozzolino, Gianluca Tettamanti, Danilo Ercolini, Morena Casartelli and Silvia Caccia
    Citation: Microbiome 2023 11:205
    Content type: Research Published on:

  13. Gypsum Hill Spring, located in Nunavut in the Canadian High Arctic, is a rare example of a cold saline spring arising through thick permafrost. It perennially discharges cold (~ 7 °C), hypersaline (7–8% salini...

    Authors: Elisse Magnuson, Ianina Altshuler, Nastasia J. Freyria, Richard J. Leveille and Lyle G. Whyte
    Citation: Microbiome 2023 11:203
    Content type: Research Published on:

  14. Cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL) is a cerebral small vessel disease that carries mutations in NOTCH3. The clinical manifestations are influenced...

    Authors: Sheng Liu, Xuejiao Men, Yang Guo, Wei Cai, Ruizhen Wu, Rongsui Gao, Weicong Zhong, Huating Guo, Hengfang Ruan, Shuli Chou, Junrui Mai, Suning Ping, Chao Jiang, Hongwei Zhou, Xiangyu Mou, Wenjing Zhao…
    Citation: Microbiome 2023 11:202
    Content type: Research Published on:

  15. The influence of microbiota in ecological interactions, and in particular competition, is poorly known. We studied competition between two insect species, the invasive pest Drosophila suzukii and the model Drosop...

    Authors: Antoine Rombaut, Romain Gallet, Kenza Qitout, Mukherjy Samy, Robin Guilhot, Pauline Ghirardini, Brian P. Lazzaro, Paul G. Becher, Anne Xuéreb, Patricia Gibert and Simon Fellous
    Citation: Microbiome 2023 11:201
    Content type: Research Published on:

  17. The microbiota of the upper respiratory tract is increasingly recognized as a gatekeeper of respiratory health. Despite this, the microbiota of healthy adults remains understudied. To address this gap, we inve...

    Authors: A. Cristina Paulo, João Lança, Sónia T. Almeida, Markus Hilty and Raquel Sá-Leão
    Citation: Microbiome 2023 11:199
    Content type: Research Published on:

  18. Improving feed efficiency is the most important goal for modern animal production. The regulatory mechanisms of controlling feed efficiency traits are extremely complex and include the functions related to hos...

    Authors: Zhengxiao He, Ranran Liu, Mengjie Wang, Qiao Wang, Jumei Zheng, Jiqiang Ding, Jie Wen, Alan G. Fahey and Guiping Zhao
    Citation: Microbiome 2023 11:198
    Content type: Research Published on:

  19. Heritable rumen microbiota is an important modulator of ruminant growth performance. However, no information exists to date on host genetics-rumen microbiota interactions and their association with phenotype i...

    Authors: Weimin Wang, Yukun Zhang, Xiaoxue Zhang, Chong Li, Lvfeng Yuan, Deyin Zhang, Yuan Zhao, Xiaolong Li, Jiangbo Cheng, Changchun Lin, Liming Zhao, Jianghui Wang, Dan Xu, Xiangpeng Yue, Wanhong Li, Xiuxiu Wen…
    Citation: Microbiome 2023 11:197
    Content type: Research Published on:

  20. Methane (CH4) is a major greenhouse gas, and ruminants are one of the sources of CH4 which is produced by the rumen microbiota. Modification of the rumen microbiota compositions will impact the CH4 production. In...

    Authors: Yao Fu, Songyang Yao, Tiankun Wang, Yongqiang Lu, Huigang Han, Xuening Liu, Dongying Lv, Xiao Ma, Shengyu Guan, Yujun Yao, Yunjie Liu, Haiying Yu, Shengli Li, Ning Yang and Guoshi Liu
    Citation: Microbiome 2023 11:196
    Content type: Research Published on:

    The Correction to this article has been published in Microbiome 2023 11:242

  21. There is a growing body of evidence suggesting that disturbance of the gut-brain axis may be one of the potential causes of major depressive disorder (MDD). However, the effects of antidepressants on the gut m...

    Authors: Yaping Wang, Jingjing Zhou, Junbin Ye, Zuoli Sun, Yi He, Yingxin Zhao, Siyu Ren, Guofu Zhang, Min Liu, Peng Zheng, Gang Wang and Jian Yang
    Citation: Microbiome 2023 11:195
    Content type: Research Published on:

  22. Bifidobacteria represent an important gut commensal in humans, particularly during initial microbiome assembly in the first year of life. Enrichment of Bifidobacterium is mediated though the utilization of human ...

    Authors: Jules A. Larke, Britta E. Heiss, Amy M. Ehrlich, Diana H. Taft, Helen E. Raybould, David A. Mills and Carolyn M. Slupsky
    Citation: Microbiome 2023 11:194
    Content type: Research Published on:

  23. There is an increasing interest in investigating the human gut virome for its influence on the gut bacterial community and its putative influence on the trajectory towards health or disease. Most gut virome st...

    Authors: Xichuan Zhai, Josué L. Castro-Mejía, Alex Gobbi, Antonios Aslampaloglou, Witold Kot, Dennis S. Nielsen and Ling Deng
    Citation: Microbiome 2023 11:193
    Content type: Methodology Published on:

  24. As microbiome research has progressed, it has become clear that most, if not all, eukaryotic organisms are hosts to microbiomes composed of prokaryotes, other eukaryotes, and viruses. Fungi have only recently ...

    Authors: Julia M. Kelliher, Aaron J. Robinson, Reid Longley, Leah Y. D. Johnson, Buck T. Hanson, Demosthenes P. Morales, Guillaume Cailleau, Pilar Junier, Gregory Bonito and Patrick S. G. Chain
    Citation: Microbiome 2023 11:192
    Content type: Comment Published on:

  26. Anchialine environments, in which oceanic water mixes with freshwater in coastal aquifers, are characterised by stratified water columns with complex physicochemical profiles. These environments, also known as...

    Authors: Timothy M. Ghaly, Amaranta Focardi, Liam D. H. Elbourne, Brodie Sutcliffe, William Humphreys, Ian T. Paulsen and Sasha G. Tetu
    Citation: Microbiome 2023 11:190
    Content type: Research Published on:

  27. The transition from water to air is a key event in the evolution of many marine organisms to access new food sources, escape water hypoxia, and exploit the higher and temperature-independent oxygen concentrati...

    Authors: Marco Fusi, David K. Ngugi, Ramona Marasco, Jenny Marie Booth, Massimiliano Cardinale, Luciano Sacchi, Emanuela Clementi, Xinyuan Yang, Elisa Garuglieri, Stilianos Fodelianakis, Grégoire Michoud and Daniele Daffonchio
    Citation: Microbiome 2023 11:189
    Content type: Research Published on:

  28. Mangrove wetlands are coastal ecosystems with important ecological features and provide habitats for diverse microorganisms with key roles in nutrient and biogeochemical cycling. However, the overall metabolic...

    Authors: Zhi-Feng Zhang, Li-Rui Liu, Yue-Ping Pan, Jie Pan and Meng Li
    Citation: Microbiome 2023 11:188
    Content type: Research Published on:

  29. Heterotrophic microbes in the Southern Ocean are challenged by the double constraint of low concentrations of organic carbon (C) and iron (Fe). These essential elements are tightly coupled in cellular processe...

    Authors: Pavla Debeljak, Barbara Bayer, Ying Sun, Gerhard J. Herndl and Ingrid Obernosterer
    Citation: Microbiome 2023 11:187
    Content type: Research Published on:

  30. Exploring metagenomic contigs and “binning” them into metagenome-assembled genomes (MAGs) are essential for the delineation of functional and evolutionary guilds within microbial communities. Despite the advan...

    Authors: Michael J. Pavia, Abhinav Chede, Zijun Wu, Hinsby Cadillo-Quiroz and Qiyun Zhu
    Citation: Microbiome 2023 11:186
    Content type: Software Published on:

  31. Reef-building corals are acutely threatened by ocean warming, calling for active interventions to reduce coral bleaching and mortality. Corals associate with a wide diversity of bacteria which can influence co...

    Authors: Talisa Doering, Kshitij Tandon, Sanjida H. Topa, Sacha J. Pidot, Linda L. Blackall and Madeleine J. H. van Oppen
    Citation: Microbiome 2023 11:185
    Content type: Research Published on:

  32. The gut microbiome is closely associated with health status, and any microbiota dysbiosis could considerably impact the host’s health. In addition, many active consortium projects have generated many reference...

    Authors: Jinlin Zhu, Heqiang Xie, Zixin Yang, Jing Chen, Jialin Yin, Peijun Tian, Hongchao Wang, Jianxin Zhao, Hao Zhang, Wenwei Lu and Wei Chen
    Citation: Microbiome 2023 11:184
    Content type: Research Published on:

  35. Some microbiota compositions are associated with negative outcomes, including among others, obesity, allergies, and the failure to respond to treatment. Microbiota manipulation or supplementation can restore a...

    Authors: Oshrit Shtossel, Sondra Turjeman, Alona Riumin, Michael R. Goldberg, Arnon Elizur, Yarin Bekor, Hadar Mor, Omry Koren and Yoram Louzoun
    Citation: Microbiome 2023 11:181
    Content type: Research Published on:

  36. The gut microbiota of the giant panda (Ailuropoda melanoleuca), a global symbol of conservation, are believed to be involved in the host’s dietary switch to a fibrous bamboo diet. However, their exact roles are s...

    Authors: Feilong Deng, Chengdong Wang, Desheng Li, Yunjuan Peng, Linhua Deng, Yunxiang Zhao, Zhihao Zhang, Ming Wei, Kai Wu, Jiangchao Zhao and Ying Li
    Citation: Microbiome 2023 11:180
    Content type: Research Published on:

  37. The fungal component of the human gut microbiome, also known as the mycobiome, plays a vital role in intestinal ecology and human health. However, the overall structure of the gut mycobiome as well as the inte...

    Authors: Senying Lai, Yan Yan, Yanni Pu, Shuchun Lin, Jian-Ge Qiu, Bing-Hua Jiang, Marisa Isabell Keller, Mingyu Wang, Peer Bork, Wei-Hua Chen, Yan Zheng and Xing-Ming Zhao
    Citation: Microbiome 2023 11:179
    Content type: Research Published on:

  38. A growing body of evidence suggests that the gut microbiota is strongly linked to general human health. Microbiome-directed interventions, such as diet and exercise, are acknowledged as a viable and achievable...

    Authors: Jiarui Chen, Sara Leal Siliceo, Yueqiong Ni, Henrik B. Nielsen, Aimin Xu and Gianni Panagiotou
    Citation: Microbiome 2023 11:178
    Content type: Research Published on:

  40. The high diversity and complexity of the microbial community make it a formidable challenge to identify and quantify the large number of proteins expressed in the community. Conventional metaproteomics approac...

    Authors: Chunlin Hao, Joshua E. Elias, Patrick K. H. Lee and Henry Lam
    Citation: Microbiome 2023 11:176
    Content type: Methodology Published on:

  41. Hadal trenches (>6000 m) are the deepest oceanic regions on Earth and depocenters for organic materials. However, how these enigmatic microbial ecosystems are fueled is largely unknown, particularly the propor...

    Authors: Xiao-Yu Zhu, Yang Li, Chun-Xu Xue, Ian D. E. A. Lidbury, Jonathan D. Todd, David J. Lea-Smith, Jiwei Tian, Xiao-Hua Zhang and Jiwen Liu
    Citation: Microbiome 2023 11:175
    Content type: Research Published on:

  42. Climate change threatens Earth’s ice-based ecosystems which currently offer archives and eco-evolutionary experiments in the extreme. Arctic cryopeg brine (marine-derived, within permafrost) and sea ice brine,...

    Authors: Zhi-Ping Zhong, Dean Vik, Josephine Z. Rapp, Olivier Zablocki, Heather Maughan, Ben Temperton, Jody W. Deming and Matthew B. Sullivan
    Citation: Microbiome 2023 11:174
    Content type: Research Published on:

  43. Authors: M. Barone, Y. Ramayo‑Caldas, J. Estellé, K. Tambosco, S. Chadi, F. Maillard, M. Gallopin, J. Planchais, F. Chain, C. Kropp, D. Rios‑Covian, H. Sokol, P. Brigidi, P. Langella and R. Martín
    Citation: Microbiome 2023 11:173
    Content type: Correction Published on:

    The original article was published in Microbiome 2023 11:140

  44. The effects of Arula-7 powder (ASP) on diarrhea and intestinal barrier function associated with its regulation of intestinal microflora in calves infected with pathogenic Escherichia coli O1 (E. coli O1) were stu...

    Authors: Hao Chen, Zhifeng Jia, Meiling He, Aorigele Chen, Xin Zhang, Jin Xu and Chunjie Wang
    Citation: Microbiome 2023 11:172
    Content type: Research Published on:

  45. Treating oral squamous cell carcinoma (OSCC) introduces new ecological environments in the oral cavity. This is expected to cause changes in the oral microbiome. The purpose of this study was to gain new infor...

    Authors: Anna I. Mäkinen, Vincent Y. Pappalardo, Mark J. Buijs, Bernd W. Brandt, Antti A. Mäkitie, Jukka H. Meurman and Egija Zaura
    Citation: Microbiome 2023 11:171
    Content type: Research Published on:

  47. Upper small intestinal dietary lipids activate a gut-brain axis regulating energy homeostasis. The prebiotic, oligofructose (OFS) improves body weight and adiposity during metabolic dysregulation but the exact...

    Authors: Savanna N. Weninger, Chloe Herman, Rachel K. Meyer, Eve T. Beauchemin, Archana Kangath, Adelina I. Lane, Taylor M. Martinez, Tahia Hasneen, Sierra A. Jaramillo, Jason Lindsey, Gayatri Vedantam, Haijiang Cai, Emily K. Cope, J. Gregory Caporaso and Frank A. Duca
    Citation: Microbiome 2023 11:169
    Content type: Research Published on:

  48. Typically, animal models studying gastrointestinal microbiotas compromised in early life have employed either germ-free animals or mice treated with a cocktail of antibiotics. Such studies intend to mimic scen...

    Authors: Emily C. Hoedt, Cara M. Hueston, Nora Cash, Roger S. Bongers, Jonathan M. Keane, Kees van Limpt, Kaouther Ben Amor, Jan Knol, John MacSharry and Douwe van Sinderen
    Citation: Microbiome 2023 11:168
    Content type: Research Published on:

  49. Legionella are parasites of freshwater protozoa, responsible for Legionellosis. Legionella can be found in a variety of aquatic environments, including rivers, lakes, and springs, as well as in engineered water s...

    Authors: Oded Bergman, Yaron Be’eri-Shlevin and Shira Ninio
    Citation: Microbiome 2023 11:167
    Content type: Research Published on:

    The Correction to this article has been published in Microbiome 2023 11:177

  50. The resistome, the collection of antibiotic resistance genes (ARGs) in a microbiome, is increasingly recognised as relevant to the development of clinically relevant antibiotic resistance. Many metagenomic stu...

    Authors: Simen Fredriksen, Stef de Warle, Peter van Baarlen, Jos Boekhorst and Jerry M. Wells
    Citation: Microbiome 2023 11:166
    Content type: Research Published on:
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