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  1. The equine gastrointestinal (GI) microbiome has been described in the context of various diseases. The observed changes, however, have not been linked to host function and therefore it remains unclear how spec...

    Authors: C. M. Whitfield-Cargile, H. C. Chung, M. C. Coleman, N. D. Cohen, A. M. Chamoun-Emanuelli, I. Ivanov, J. S. Goldsby, L. A. Davidson, I. Gaynanova, Y. Ni and R. S. Chapkin
    Citation: Microbiome 2024 12:74
  2. The utilization of mulberry branch fiber (MF), the largest by-product of the sericulture industry, is an important issue. Supplementation with MF as a dietary fiber for poultry may serve as a useful applicatio...

    Authors: Hong Hu, Anjian Li, Changyou Shi, Liang Chen, Zelong Zhao, Xiaojian Yin, Qiang Zhang, Ying Huang and Hongbin Pan
    Citation: Microbiome 2024 12:73
  3. Zoonotic viruses cause substantial public health and socioeconomic problems worldwide. Understanding how viruses evolve and spread within and among wildlife species is a critical step when aiming for proactive...

    Authors: Daxi Wang, Xinglou Yang, Zirui Ren, Ben Hu, Hailong Zhao, Kaixin Yang, Peibo Shi, Zhipeng Zhang, Qikai Feng, Carol Vannesa Nawenja, Vincent Obanda, Kityo Robert, Betty Nalikka, Cecilia Njeri Waruhiu, Griphin Ochieng Ochola, Samson Omondi Onyuok…
    Citation: Microbiome 2024 12:72
  4. Childhood undernutrition is a major global health challenge with devastating lifelong consequences. Linear growth stunting due to undernutrition has been linked to poor health outcomes, and mothers who experie...

    Authors: Yadeliz A. Serrano Matos, Jasmine Cano, Hamna Shafiq, Claire Williams, Julee Sunny and Carrie A. Cowardin
    Citation: Microbiome 2024 12:71
  5. Gut microbiota is significantly influenced by altitude. However, the dynamics of gut microbiota in relation to altitude remains undisclosed.

    Authors: Yang Han, Xiaoshuang Liu, Qian Jia, Jiayu Xu, Jinlong Shi, Xiang Li, Guotong Xie, Xiaojing Zhao and Kunlun He
    Citation: Microbiome 2024 12:70
  6. Ruminants are important livestock animals that have a unique digestive system comprising multiple stomach compartments. Despite significant progress in the study of microbiome in the gastrointestinal tract (GI...

    Authors: Yingjian Wu, Na Gao, Chuqing Sun, Tong Feng, Qingyou Liu and Wei-Hua Chen
    Citation: Microbiome 2024 12:69
  7. The trophic strategy is one key principle to categorize microbial lifestyles, by broadly classifying microorganisms based on the combination of their preferred carbon sources, electron sources, and electron si...

    Authors: Xiuran Yin, Guowei Zhou, Mingwei Cai, Tim Richter-Heitmann, Qing-Zeng Zhu, Mara Maeke, Ajinkya C. Kulkarni, Rolf Nimzyk, Marcus Elvert and Michael W. Friedrich
    Citation: Microbiome 2024 12:68
  8. Understanding the characteristics and structure of populations is fundamental to comprehending ecosystem processes and evolutionary adaptations. While the study of animal and plant populations has spanned a fe...

    Authors: Ramiro Logares
    Citation: Microbiome 2024 12:67
  9. Aerobic anoxygenic phototrophic (AAP) bacteria are heterotrophic bacteria that supply their metabolism with light energy harvested by bacteriochlorophyll-a-containing reaction centers. Despite their substantial c...

    Authors: Cristian Villena-Alemany, Izabela Mujakić, Livia K. Fecskeová, Jason Woodhouse, Adrià Auladell, Jason Dean, Martina Hanusová, Magdalena Socha, Carlota R. Gazulla, Hans-Joachim Ruscheweyh, Shinichi Sunagawa, Vinicius Silva Kavagutti, Adrian-Ştefan Andrei, Hans-Peter Grossart, Rohit Ghai, Michal Koblížek…
    Citation: Microbiome 2024 12:65
  10. Pre-term birth, the leading cause of neonatal mortality, has been associated with maternal periodontal disease and the presence of oral pathogens in the placenta. However, the mechanisms that underpin this lin...

    Authors: Kazune Pax, Nurcan Buduneli, Murat Alan, Pinar Meric, Onder Gurlek, Shareef M. Dabdoub and Purnima S. Kumar
    Citation: Microbiome 2024 12:64
  11. Chronic infection and consequent airway inflammation are the leading causes of morbidity and early mortality for people living with cystic fibrosis (CF). However, lower airway infections across a range of chro...

    Authors: Helen Gavillet, Lauren Hatfield, Andrew Jones, Anirban Maitra, Alexander Horsley, Damian Rivett and Christopher van der Gast
    Citation: Microbiome 2024 12:63
  12. The International Space Station (ISS) stands as a testament to human achievement in space exploration. Despite its highly controlled environment, characterised by microgravity, increased CO ...

    Authors: Pratyay Sengupta, Shobhan Karthick Muthamilselvi Sivabalan, Nitin Kumar Singh, Karthik Raman and Kasthuri Venkateswaran
    Citation: Microbiome 2024 12:62
  13. The gut microbiota is recognized as a regulator of brain development and behavioral outcomes during childhood. Nonetheless, associations between the gut microbiota and behavior are often inconsistent among stu...

    Authors: Marcel van de Wouw, Yanan Wang, Matthew L. Workentine, Elnaz Vaghef-Mehrabani, Delaney Barth, Emily M. Mercer, Deborah Dewey, Marie-Claire Arrieta, Raylene A. Reimer, Lianne Tomfohr-Madsen and Gerald F. Giesbrecht
    Citation: Microbiome 2024 12:60
  14. The host–microbiota interaction plays a crucial role in maintaining homeostasis and disease susceptibility, and microbial tryptophan metabolites are potent modulators of host physiology. However, whether and h...

    Authors: Gang Wang, Yuxin Fan, Guolong Zhang, Shuang Cai, Yonghang Ma, Lijie Yang, Yuming Wang, Haitao Yu, Shiyan Qiao and Xiangfang Zeng
    Citation: Microbiome 2024 12:59
  15. Microbiota are closely associated with human health and disease. Metaproteomics can provide a direct means to identify microbial proteins in microbiota for compositional and functional characterization. Howeve...

    Authors: Enhui Wu, Vijini Mallawaarachchi, Jinzhi Zhao, Yi Yang, Hebin Liu, Xiaoqing Wang, Chengpin Shen, Yu Lin and Liang Qiao
    Citation: Microbiome 2024 12:58
  16. Accumulating clinical evidence suggests that lung microbiome is closely linked to the progression of pulmonary diseases; however, it is still controversial which specimen type is preferred for the evaluation o...

    Authors: Lijun Zheng, Chengjun Liu, Hongjing Wang, Jun Zhang, Lejiao Mao, Xiaomei Dong, Siyao Hu, Na Li, Dandan Pi, Jingfu Qiu, Feng Xu, Chengzhi Chen and Zhen Zou
    Citation: Microbiome 2024 12:56
  17. Microorganisms are responsible for nutrient removal and resource recovery in wastewater treatment plants (WWTPs), and their diversity is often studied by 16S rRNA gene amplicon sequencing. However, this approa...

    Authors: Huifeng Hu, Jannie Munk Kristensen, Craig William Herbold, Petra Pjevac, Katharina Kitzinger, Bela Hausmann, Morten Kam Dahl Dueholm, Per Halkjaer Nielsen and Michael Wagner
    Citation: Microbiome 2024 12:55
  18. Massive amounts of sewage sludge are generated during biological sewage treatment and are commonly subjected to anaerobic digestion, land application, and landfill disposal. Concurrently, persistent organic po...

    Authors: Guofang Xu, Siyan Zhao, Matthew J. Rogers, Chen Chen and Jianzhong He
    Citation: Microbiome 2024 12:54
  19. The gut microbiome plays a crucial role in understanding complex biological mechanisms, including host resilience to stressors. Investigating the microbiota-resilience link in animals and plants holds relevanc...

    Authors: Enrico Mancin, Christian Maltecca, Yi Jian Huang, Roberto Mantovani and Francesco Tiezzi
    Citation: Microbiome 2024 12:53
  20. The rise of linezolid resistance has been widely observed both in clinical and non-clinical settings. However, there were still data gaps regarding the comprehensive prevalence and interconnections of linezoli...

    Authors: Weiyi Shen, Chang Cai, Ning Dong, Jiawei Chen, Rong Zhang and Jiachang Cai
    Citation: Microbiome 2024 12:52
  21. Partial nitritation-anammox (PNA) is a biological nitrogen removal process commonly used in wastewater treatment plants for the treatment of warm and nitrogen-rich sludge liquor from anaerobic digestion, often...

    Authors: Carolina Suarez, Tage Rosenqvist, Ivelina Dimitrova, Christopher J. Sedlacek, Oskar Modin, Catherine J. Paul, Malte Hermansson and Frank Persson
    Citation: Microbiome 2024 12:51
  22. Antibiotics notoriously perturb the gut microbiota. We treated healthy volunteers either with cefotaxime or ceftriaxone for 3 days, and collected in each subject 12 faecal samples up to day 90. Using untargete...

    Authors: Camille d’Humières, Margot Delavy, Laurie Alla, Farid Ichou, Emilie Gauliard, Amine Ghozlane, Florence Levenez, Nathalie Galleron, Benoit Quinquis, Nicolas Pons, Jimmy Mullaert, Antoine Bridier-Nahmias, Bénédicte Condamine, Marie Touchon, Dominique Rainteau, Antonin Lamazière…
    Citation: Microbiome 2024 12:50
  23. Aronia melanocarpa is a berry rich in polyphenols known for health benefits. However, the bioavailability of polyphenols has been questioned, and the individual taste acceptance of the fruit with its specific fla...

    Authors: Sonja Lackner, Alexander Mahnert, Christine Moissl-Eichinger, Tobias Madl, Hansjörg Habisch, Nathalie Meier-Allard, Christina Kumpitsch, Theresa Lahousen, Alexandra Kohlhammer-Dohr, Sabrina Mörkl, Herbert Strobl and Sandra Holasek
    Citation: Microbiome 2024 12:49
  24. Long-distance transportation, a frequent practice in the cattle industry, stresses calves and results in morbidity, mortality, and growth suppression, leading to welfare concerns and economic losses. Alkaline ...

    Authors: Jiancheng Qi, Linli Gan, Fangyuan Huang, Yue Xie, Hongrui Guo, Hengmin Cui, Junliang Deng, Liping Gou, Dongjie Cai, Chunhui Pan, Xia Lu, Ali Mujtaba Shah, Jing Fang and Zhicai Zuo
    Citation: Microbiome 2024 12:48
  25. Macroalgae, especially reds (Rhodophyta Division) and browns (Phaeophyta Division), are known for producing various halogenated compounds. Yet, the reasons underlying their production and the fate of these met...

    Authors: Anna Lavecchia, Bruno Fosso, Aschwin H. Engelen, Sara Borin, Caterina Manzari, Ernesto Picardi, Graziano Pesole and Antonio Placido
    Citation: Microbiome 2024 12:47
  26. By analyzing the proteins which are the workhorses of biological systems, metaproteomics allows us to list the taxa present in any microbiota, monitor their relative biomass, and characterize the functioning o...

    Authors: Thibaut Dumas, Roxana Martinez Pinna, Clément Lozano, Sonja Radau, Olivier Pible, Lucia Grenga and Jean Armengaud
    Citation: Microbiome 2024 12:46
  27. The severity and frequency of drought are expected to increase substantially in the coming century and dramatically reduce crop yields. Manipulation of rhizosphere microbiomes is an emerging strategy for mitig...

    Authors: Hong Yue, Xuming Sun, Tingting Wang, Ali Zhang, Dejun Han, Gehong Wei, Weining Song and Duntao Shu
    Citation: Microbiome 2024 12:44

    The Correction to this article has been published in Microbiome 2024 12:61

  28. Bioaugmentation has the potential to enhance the ability of ecological technology to treat sulfonamide-containing wastewater, but the low viability of the exogenous degraders limits their practical application...

    Authors: Jianfei Chen, Xiuli Chen, Ying Zhu, Shuang Yan and Shuguang Xie
    Citation: Microbiome 2024 12:43
  29. Global warming is causing large-scale disruption of cnidarian-Symbiodiniaceae symbioses fundamental to major marine ecosystems, such as coral reefs. However, the mechanisms by which heat stress perturbs these ...

    Authors: Gaëlle Toullec, Nils Rädecker, Claudia Pogoreutz, Guilhem Banc-Prandi, Stéphane Escrig, Christel Genoud, Cristina Martin Olmos, Jorge Spangenberg and Anders Meibom
    Citation: Microbiome 2024 12:42
  30. Chondroitin sulfate (CS) has widely been used as a symptomatic slow-acting drug or a dietary supplement for the treatment and prevention of osteoarthritis. However, CS could not be absorbed after oral intake d...

    Authors: Yamin Wang, Mingfeng Ma, Wei Dai, Qingsen Shang and Guangli Yu
    Citation: Microbiome 2024 12:41
  31. Bacterial transfers from plants to insect herbivore guts have been well investigated. However, bacterial exchanges between plant phyllospheres and insect cuticles remain unclear, as does their related biologic...

    Authors: Pengfei Zhao, Song Hong, Yuekun Li, Haimin Chen, Hanchun Gao and Chengshu Wang
    Citation: Microbiome 2024 12:40
  32. The final step in the anaerobic decomposition of biopolymers is methanogenesis. Rice field soils are a major anthropogenic source of methane, with straw commonly used as a fertilizer in rice farming. Here, we ...

    Authors: Xin Li, Qicheng Bei, Mehrdad Rabiei Nematabad, Jingjing Peng and Werner Liesack
    Citation: Microbiome 2024 12:39
  33. Although rumen development is crucial, hindgut undertakes a significant role in young ruminants’ physiological development. High-starch diet is usually used to accelerate rumen development for young ruminants,...

    Authors: Chunjia Jin, Shengru Wu, Ziqi Liang, Jun Zhang, Xinjian Lei, Hanxun Bai, Gaofeng Liang, Xiaodong Su, Xiaodong Chen, Peiyue Wang, Yue Wang, Leluo Guan and Junhu Yao
    Citation: Microbiome 2024 12:38
  34. Microbial functioning on marine plastic surfaces has been poorly documented, especially within cold climates where temperature likely impacts microbial activity and the presence of hydrocarbonoclastic microorg...

    Authors: Lauren F. Messer, Charlotte E. Lee, Ruddy Wattiez and Sabine Matallana-Surget
    Citation: Microbiome 2024 12:36
  35. People living with HIV (PLWH), even when viral replication is controlled through antiretroviral therapy (ART), experience persistent inflammation. This inflammation is partly attributed to intestinal microbial...

    Authors: Shalini Singh, Leila B. Giron, Maliha W. Shaikh, Shivanjali Shankaran, Phillip A. Engen, Zlata R. Bogin, Simona A. Bambi, Aaron R. Goldman, Joao L. L. C. Azevedo, Lorena Orgaz, Nuria de Pedro, Patricia González, Martin Giera, Aswin Verhoeven, Elena Sánchez-López, Ivona Pandrea…
    Citation: Microbiome 2024 12:31
  36. Haemaphysalis longicornis is drawing attentions for its geographic invasion, extending population, and emerging disease threat. However, there are still substantial gaps in our knowledge of viral composition in r...

    Authors: Run-Ze Ye, Yu-Yu Li, Da-Li Xu, Bai-Hui Wang, Xiao-Yang Wang, Ming-Zhu Zhang, Ning Wang, Wan-Ying Gao, Cheng Li, Xiao-Yu Han, Li-Feng Du, Luo-Yuan Xia, Ke Song, Qing Xu, Jing Liu, Nuo Cheng…
    Citation: Microbiome 2024 12:35
  37. Remodeling eubiosis of the gut microenvironment may contribute to preventing the occurrence and development of depression. Mounting experimental evidence has shown that complement C3 signaling is associated wi...

    Authors: Wenzhi Hao, Qingyu Ma, Lu Wang, Naijun Yuan, Hua Gan, Liangliang He, Xiaojuan Li, Junqing Huang and Jiaxu Chen
    Citation: Microbiome 2024 12:34
  38. Domesticated pigs serve as an ideal animal model for biomedical research and also provide the majority of meat for human consumption in China. Porcine intramuscular fat content associates with human health and...

    Authors: Jiajie Sun, Fang Xie, Jing Wang, Junyi Luo, Ting Chen, Qingyan Jiang, Qianyun Xi, George E. Liu and Yongliang Zhang
    Citation: Microbiome 2024 12:33
  39. Marine microalgae (phytoplankton) mediate almost half of the worldwide photosynthetic carbon dioxide fixation and therefore play a pivotal role in global carbon cycling, most prominently during massive phytopl...

    Authors: Feng-Qing Wang, Daniel Bartosik, Chandni Sidhu, Robin Siebers, De-Chen Lu, Anke Trautwein-Schult, Dörte Becher, Bruno Huettel, Johannes Rick, Inga V. Kirstein, Karen H. Wiltshire, Thomas Schweder, Bernhard M. Fuchs, Mia M. Bengtsson, Hanno Teeling and Rudolf I. Amann
    Citation: Microbiome 2024 12:32
  40. Intestinal microbial composition not only affects the health of the gut but also influences centrally mediated systems involved in mood, through the “gut-brain” axis, a bidirectional communication between gut ...

    Authors: Francesca De Santa, Georgios Strimpakos, Nicole Marchetti, Giorgio Gargari, Alessio Torcinaro, Stefania Arioli, Diego Mora, Carla Petrella and Stefano Farioli-Vecchioli
    Citation: Microbiome 2024 12:29
  41. Bisphenol A (BPA) is an environmental contaminant with endocrine-disrupting properties that induce fetal growth restriction (FGR). Previous studies on pregnant ewes revealed that BPA exposure causes placental ...

    Authors: Hao Zhang, Xia Zha, Bei Zhang, Yi Zheng, Mabrouk Elsabagh, Hongrong Wang and Mengzhi Wang
    Citation: Microbiome 2024 12:28
  42. Seagrasses offer various ecosystem services and possess high levels of primary productivity. However, the development of mariculture has affected the homeostasis of seagrass meadow ecosystems. Plant-microbiome...

    Authors: Hao Sun, Tianyu Wang, Shuai Liu, Xiaoyu Tang, Jie Sun, Xuerui Liu, Ye Zhao, Pingping Shen and Yanying Zhang
    Citation: Microbiome 2024 12:27
  43. Horizontal gene transfer (HGT) describes the transmission of DNA outside of direct ancestral lineages. The process is best characterised within the bacterial kingdom and can enable the acquisition of genetic t...

    Authors: Anna H. Behling, Brooke C. Wilson, Daniel Ho, Wayne S. Cutfield, Tommi Vatanen and Justin M. O’Sullivan
    Citation: Microbiome 2024 12:26
  44. Chickens are one of the most widely farmed animals worldwide and play a crucial role in meat and egg production. Gut microbiota is essential for chickens’ health, disease, growth, and egg production. However, ...

    Authors: Hongye Shen, Tinghui Wang, Weiwei Dong, Guoping Sun, Jun Liu, Nan Peng and Shumiao Zhao
    Citation: Microbiome 2024 12:25

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