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  1. Beneficial associations between plants and soil microorganisms are critical for crop fitness and resilience. However, it remains obscure how microorganisms are assembled across different root compartments and ...

    Authors: Danning Wang, Xiaoming He, Marcel Baer, Klea Lami, Baogang Yu, Alberto Tassinari, Silvio Salvi, Gabriel Schaaf, Frank Hochholdinger and Peng Yu
    Citation: Microbiome 2024 12:124
  2. The Atribacterota are widely distributed in the subsurface biosphere. Recently, the first Atribacterota isolate was described and the number of Atribacterota genome sequences retrieved from environmental samples ...

    Authors: Jian-Yu Jiao, Shi-Chun Ma, Nimaichand Salam, Zhuo Zhou, Zheng-Han Lian, Li Fu, Ying Chen, Cheng-Hui Peng, Yu-Ting OuYang, Hui Fan, Ling Li, Yue Yi, Jing-Yi Zhang, Jing-Yuan Wang, Lan Liu, Lei Gao…
    Citation: Microbiome 2024 12:123
  3. Fecal microbiota transplantation (FMT) is a therapeutic intervention used to treat diseases associated with the gut microbiome. In the human gut microbiome, phages have been implicated in influencing human hea...

    Authors: Michele Zuppi, Tommi Vatanen, Brooke C. Wilson, Evgeniia Golovina, Theo Portlock, Wayne S. Cutfield, Mark H. Vickers and Justin M. O’Sullivan
    Citation: Microbiome 2024 12:122
  4. Despite rapid advances in genomic-resolved metagenomics and remarkable explosion of metagenome-assembled genomes (MAGs), the function of uncultivated anaerobic lineages and their interactions in carbon mineral...

    Authors: Weifu Yan, Dou Wang, Yubo Wang, Chunxiao Wang, Xi Chen, Lei Liu, Yulin Wang, Yu-You Li, Yoichi Kamagata, Masaru K. Nobu and Tong Zhang
    Citation: Microbiome 2024 12:121
  5. Functional redundancy (FR) is widely present, but there is no consensus on its formation process and influencing factors. Taxonomically distinct microorganisms possessing genes for the same function in a commu...

    Authors: Dan-dan Li, Jianing Wang, Yiru Jiang, Peng Zhang, Ya Liu, Yue-zhong Li and Zheng Zhang
    Citation: Microbiome 2024 12:120
  6. Fecal microbiota transplantation (FMT) and fecal virome transplantation (FVT, sterile filtrated donor feces) have been effective in treating recurrent Clostridioides difficile infections, possibly through bacteri...

    Authors: Torben Sølbeck Rasmussen, Xiaotian Mao, Sarah Forster, Sabina Birgitte Larsen, Alexandra Von Münchow, Kaare Dyekær Tranæs, Anders Brunse, Frej Larsen, Josue Leonardo Castro Mejia, Signe Adamberg, Axel Kornerup Hansen, Kaarel Adamberg, Camilla Hartmann Friis Hansen and Dennis Sandris Nielsen
    Citation: Microbiome 2024 12:119
  7. Endometrial cancer is a multifactorial disease with inflammatory, metabolic and potentially microbial cues involved in disease pathogenesis. The endometrial cancer microbiome has been poorly characterised so f...

    Authors: Anita Semertzidou, Eilbhe Whelan, Ann Smith, Sherrianne Ng, Lauren Roberts, Jan J. Brosens, Julian R. Marchesi, Phillip R. Bennett, David A. MacIntyre and Maria Kyrgiou
    Citation: Microbiome 2024 12:118
  8. Shotgun metagenomics for microbial community survey recovers enormous amount of information for microbial genomes that include their abundances, taxonomic, and phylogenetic information, as well as their genomi...

    Authors: Orges Koci, Richard K. Russell, M. Guftar Shaikh, Christine Edwards, Konstantinos Gerasimidis and Umer Zeeshan Ijaz
    Citation: Microbiome 2024 12:117
  9. Population stratification based on interindividual variability in gut microbiota composition has revealed the existence of several ecotypes named enterotypes in humans and various animal species. Enterotypes a...

    Authors: Catherine Larzul, Jordi Estellé, Marion Borey, Fany Blanc, Gaëtan Lemonnier, Yvon Billon, Mamadou Gabou Thiam, Benoît Quinquis, Nathalie Galleron, Deborah Jardet, Jérôme Lecardonnel, Florian Plaza Oñate and Claire Rogel-Gaillard
    Citation: Microbiome 2024 12:116
  10. Microbial adaptation to salinity has been a classic inquiry in the field of microbiology. It has been demonstrated that microorganisms can endure salinity stress via either the “salt-in” strategy, involving in...

    Authors: Ziheng Wu, Minchun Li, Liping Qu, Chuanlun Zhang and Wei Xie
    Citation: Microbiome 2024 12:115
  11. Mediterranean diet rich in polyphenolic compounds holds great promise to prevent and alleviate multiple sclerosis (MS), a central nervous system autoimmune disease associated with gut microbiome dysbiosis. Hea...

    Authors: Bing Han, Lin Shi, Ming-Yue Bao, Feng-Lin Yu, Yan Zhang, Xin-Yu Lu, Yang Wang, Dong-Xiao Li, Jing-Chao Lin, Wei Jia, Xing Li and Yuan Zhang
    Citation: Microbiome 2024 12:114
  12. Authors: Heather Armstrong, Mandana Rahbari, Heekuk Park, David Sharon, Aducio Thiesen, Naomi Hotte, Ning Sun, Hussain Syed, Hiatem Abofayed, Weiwei Wang, Karen Madsen, Eytan Wine and Andrew Mason
    Citation: Microbiome 2024 12:112

    The original article was published in Microbiome 2023 11:39

  13. Authors: Yan-fang Hou, Chang Shan, Si-yue Zhuang, Qian-qian Zhuang, Arijit Ghosh, Ke-cheng Zhu, Xiao-ke Kong, Shu-min Wang, Yan-ling Gong, Yu-ying Yang, Bei Tao, Li-hao Sun, Hong-Yan Zhao, Xing-zhi Guo, Wei-qing Wang, Guang Ning…
    Citation: Microbiome 2024 12:111

    The original article was published in Microbiome 2021 9:34

  14. Bacterial vaginosis (BV) increases HIV acquisition risk, potentially by eliciting genital inflammation. After BV treatment, the vaginal administration of LACTIN-V, a live biotherapeutic containing the Lactobacill...

    Authors: Eric Armstrong, Anke Hemmerling, Steve Miller, Sanja Huibner, Maria Kulikova, Emily Crawford, Gloria R. Castañeda, Bryan Coburn, Craig R. Cohen and Rupert Kaul
    Citation: Microbiome 2024 12:110
  15. The prevalence of hyperuricaemia (HUA), a metabolic disorder characterized by elevated levels of uric acid, is on the rise and is frequently associated with renal injury. Gut microbiota and gut-derived uremic ...

    Authors: Xinghong Zhou, Shuai Ji, Liqian Chen, Xiaoyu Liu, Yijian Deng, Yanting You, Ming Wang, Qiuxing He, Baizhao Peng, Ying Yang, Xiaohu Chen, Hiu Yee Kwan, Lin Zhou, Jieyu Chen and Xiaoshan Zhao
    Citation: Microbiome 2024 12:109
  16. Despite serious health and social consequences, effective intervention strategies for habitual alcohol binge drinking are lacking. The development of novel therapeutic and preventative approaches is highly des...

    Authors: Suresh C. Bokoliya, Jordan Russell, Yair Dorsett, Hunter A. Panier, Vijender Singh, Lauren Daddi, Hanshu Yuan, Liv R. Dedon, Zhongmao Liu, Yuqi Zhou, Zefang Min, Jessica R. Barson, Jonathan Covault, Jason A. Bubier and Yanjiao Zhou
    Citation: Microbiome 2024 12:108
  17. Aquaculture is an important food source worldwide. The extensive use of antibiotics in intensive large-scale farms has resulted in resistance development. Non-intensive aquaculture is another aquatic feeding m...

    Authors: Li Tian, Guimei Fang, Guijie Li, Liguan Li, Tong Zhang and Yanping Mao
    Citation: Microbiome 2024 12:107
  18. Authors: Denise P. Silva, Helena D. M. Villela, Henrique F. Santos, Gustavo A. S. Duarte, José Roberto Ribeiro, Angela M. Ghizelini, Caren L. S. Vilela, Phillipe M. Rosado, Carolline S. Fazolato, Erika P. Santoro, Flavia L. Carmo, Dalton S. Ximenes, Adriana U. Soriano, Caio T. C. C. Rachid, Rebecca L. Vega Thurber and Raquel S. Peixoto
    Citation: Microbiome 2024 12:105

    The original article was published in Microbiome 2021 9:118

  19. Ruminant gut microbiota are critical in ecological adaptation, evolution, and nutrition utilization because it regulates energy metabolism, promotes nutrient absorption, and improves immune function. To study ...

    Authors: Ke Zhang, Chong He, Lei Wang, Langda Suo, Mengmeng Guo, Jiazhong Guo, Ting Zhang, Yangbin Xu, Yu Lei, Gongwei Liu, Quan Qian, Yunrui Mao, Peter Kalds, Yujiang Wu, Awang Cuoji, Yuxin Yang…
    Citation: Microbiome 2024 12:104
  20. The metabolic disturbances of obesity can be mitigated by strategies modulating the gut microbiota. In this study, we sought to identify whether innate or adaptive immunity mediates the beneficial metabolic ef...

    Authors: Marina Romaní-Pérez, Inmaculada López-Almela, Clara Bullich-Vilarrubias, Zoran Evtoski, Alfonso Benítez-Páez and Yolanda Sanz
    Citation: Microbiome 2024 12:103
  21. Plant microbiota contributes to plant growth and health, including enhancing plant resistance to various diseases. Despite remarkable progress in understanding diseases resistance in plants, the precise role o...

    Authors: Yizhu Qiao, Zhendong Wang, Hong Sun, Hanyue Guo, Yang Song, He Zhang, Yang Ruan, Qicheng Xu, Qiwei Huang, Qirong Shen and Ning Ling
    Citation: Microbiome 2024 12:101
  22. Vaginal microbiota composition is associated with spontaneous preterm birth (sPTB), depending on ethnicity. Host-microbiota interactions are thought to play an important underlying role in this association bet...

    Authors: H. J. Schuster, A. C. Breedveld, S. P. F. Matamoros, R. van Eekelen, R. C. Painter, M. Kok, P. J. Hajenius, P. H. M. Savelkoul, M. van Egmond and R. van Houdt
    Citation: Microbiome 2024 12:99
  23. Recent studies have reported the identity and functions of key anaerobes involved in the degradation of organic matter (OM) in deep (> 1000 m) sulfidic marine habitats. However, due to the lack of available is...

    Authors: Subhash Yadav, Michel Koenen, Nicole J. Bale, Wietse Reitsma, Julia C. Engelmann, Kremena Stefanova, Jaap S. Sinninghe Damsté and Laura Villanueva
    Citation: Microbiome 2024 12:98
  24. Biological nitrogen fixation is a fundamental process sustaining all life on earth. While distribution and diversity of N2-fixing soil microbes have been investigated by numerous PCR amplicon sequencing of nitrog...

    Authors: Yoko Masuda, Kazumori Mise, Zhenxing Xu, Zhengcheng Zhang, Yutaka Shiratori, Keishi Senoo and Hideomi Itoh
    Citation: Microbiome 2024 12:95
  25. Microbial secondary metabolites play a crucial role in the intricate interactions within the natural environment. Among these metabolites, ribosomally synthesized and post-translationally modified peptides (Ri...

    Authors: Ying Gao, Zheng Zhong, Dengwei Zhang, Jian Zhang and Yong-Xin Li
    Citation: Microbiome 2024 12:94
  26. The gut microbiota and their hosts profoundly affect each other’s physiology and evolution. Identifying host-selected traits is crucial to understanding the processes that govern the evolving interactions betw...

    Authors: Yujie Meng, Xue Zhang, Yifan Zhai, Yuan Li, Zenghua Shao, Shanshan Liu, Chong Zhang, Xin-Hui Xing and Hao Zheng
    Citation: Microbiome 2024 12:93
  27. Dark pigmented snow and glacier ice algae on glaciers and ice sheets contribute to accelerating melt. The biological controls on these algae, particularly the role of viruses, remain poorly understood. Giant v...

    Authors: Laura Perini, Katie Sipes, Athanasios Zervas, Christopher Bellas, Stefanie Lutz, Mohammad Moniruzzaman, Rey Mourot, Liane G. Benning, Martyn Tranter and Alexandre M. Anesio
    Citation: Microbiome 2024 12:91
  28. Gut microbiome metabolites are important modulators of host health and disease. However, the overall metabolic potential of the gut microbiome and interactions with the host organs have been underexplored.

    Authors: Xia Xiao, Yixuan Zhou, Xinwei Li, Jing Jin, Jerika Durham, Zifan Ye, Yipeng Wang, Bernhard Hennig and Pan Deng
    Citation: Microbiome 2024 12:90
  29. Non-toxic approaches to enhance radiotherapy outcomes are beneficial, particularly in ageing populations. Based on preclinical findings showing that high-fibre diets sensitised bladder tumours to irradiation b...

    Authors: Chee Kin Then, Salome Paillas, Aliu Moomin, Mariya D. Misheva, Rachel A. Moir, Susan M. Hay, David Bremner, Kristine S. Roberts (nee Nellany), Ellen E. Smith, Zeynab Heidari, Daniel Sescu, Xuedan Wang, Alejandro Suárez-Bonnet, Nadine Hay, Sarah L. Murdoch, Ryoichi Saito…
    Citation: Microbiome 2024 12:89
  30. During the bloom season, the colonial cyanobacterium Microcystis forms complex aggregates which include a diverse microbiome within an exopolymer matrix. Early research postulated a simple mutualism existing with...

    Authors: Haiyuan Cai, Christopher J. McLimans, Helong Jiang, Feng Chen, Lee R. Krumholz and K. David Hambright
    Citation: Microbiome 2024 12:88
  31. In environmental bacteria, the selective advantage of antibiotic resistance genes (ARGs) can be increased through co-localization with genes such as other ARGs, biocide resistance genes, metal resistance genes...

    Authors: Xuanji Li, Asker Brejnrod, Urvish Trivedi, Jakob Russel, Jonathan Thorsen, Shiraz A Shah, Gisle Alberg Vestergaard, Morten Arendt Rasmussen, Joseph Nesme, Hans Bisgaard, Jakob Stokholm and Søren Johannes Sørensen
    Citation: Microbiome 2024 12:87
  32. Parasitic helminths influence the composition of the gut microbiome. However, the microbiomes of individuals living in helminth-endemic regions are understudied. The Orang Asli, an indigenous population in Mal...

    Authors: Shushan Sargsian, Octavio Mondragón-Palomino, Alannah Lejeune, Defne Ercelen, Wen-Bing Jin, Alan Varghese, Yvonne A. L. Lim, Chun-Jun Guo, P’ng Loke and Ken Cadwell
    Citation: Microbiome 2024 12:86
  33. Left ventricular diastolic dysfunction (LVDD) is an important precursor of heart failure (HF), but little is known about its relationship with gut dysbiosis and microbial-related metabolites. By leveraging the...

    Authors: Kai Luo, Alkis Taryn, Eun-Hye Moon, Brandilyn A. Peters, Scott D. Solomon, Martha L. Daviglus, Mayank M. Kansal, Bharat Thyagarajan, Marc D. Gellman, Jianwen Cai, Robert D. Burk, Rob Knight, Robert C. Kaplan, Susan Cheng, Carlos J. Rodriguez, Qibin Qi…
    Citation: Microbiome 2024 12:85
  34. Emergence of antibiotic resistance in bacteria is an important threat to global health. Antibiotic resistance genes (ARGs) are some of the key components to define bacterial resistance and their spread in diff...

    Authors: Yao Pei, Marcus Ho-Hin Shum, Yunshi Liao, Vivian W. Leung, Yu-Nong Gong, David K. Smith, Xiaole Yin, Yi Guan, Ruibang Luo, Tong Zhang and Tommy Tsan-Yuk Lam
    Citation: Microbiome 2024 12:84
  35. Fungi and bacteria coexist in a wide variety of environments, and their interactions are now recognized as the norm in most agroecosystems. These microbial communities harbor keystone taxa, which facilitate co...

    Authors: Zexing Jin, Feiyan Jiang, Letian Wang, Stéphane Declerck, Gu Feng and Lin Zhang
    Citation: Microbiome 2024 12:83
  36. After two decades of extensive microbiome research, the current forefront of scientific exploration involves moving beyond description and classification to uncovering the intricate mechanisms underlying the c...

    Authors: Beatriz Jorrin, Timothy L. Haskett, Hayley E. Knights, Anna Martyn, Thomas J Underwood, Jessica Dolliver, Raphael Ledermann and Philip S. Poole
    Citation: Microbiome 2024 12:81

    The Correction to this article has been published in Microbiome 2024 12:92

  37. Antibiotic exposure can occur in medical settings and from environmental sources. Long-term effects of brief antibiotic exposure in early life are largely unknown.

    Authors: Yuehui Hong, Hao Li, Linkang Chen, Hongtian Su, Bin Zhang, Yu Luo, Chengji Li, Zuguo Zhao, Yiming Shao and Lianxian Guo
    Citation: Microbiome 2024 12:80
  38. Artisanal cheeses usually contain a highly diverse microbial community which can significantly impact their quality and safety. Here, we describe a detailed longitudinal study assessing the impact of ripening ...

    Authors: Elena A. Alexa, José F. Cobo-Díaz, Erica Renes, Tom F. O´Callaghan, Kieran Kilcawley, David Mannion, Iwona Skibinska, Lorena Ruiz, Abelardo Margolles, Paula Fernández-Gómez, Adrián Alvarez-Molina, Paula Puente-Gómez, Fiona Crispie, Mercedes López, Miguel Prieto, Paul D. Cotter…
    Citation: Microbiome 2024 12:78
  39. The deep sea represents the largest marine ecosystem, driving global-scale biogeochemical cycles. Microorganisms are the most abundant biological entities and play a vital role in the cycling of organic matter...

    Authors: Yan-Ru Dang, Qian-Qian Cha, Sha-Sha Liu, Shu-Yan Wang, Ping-Yi Li, Chun-Yang Li, Peng Wang, Xiu-Lan Chen, Ji-Wei Tian, Yu Xin, Yin Chen, Yu-Zhong Zhang and Qi-Long Qin
    Citation: Microbiome 2024 12:77
  40. The etiology of inflammatory bowel disease (IBD) is unclear but involves both genetics and environmental factors, including the gut microbiota. Indeed, exacerbated activation of the gastrointestinal immune sys...

    Authors: C. Danne, B. Lamas, A. Lavelle, M.-L. Michel, G. Da Costa, Hang-Phuong Pham, A. Lefevre, C. Bridonneau, M. Bredon, J. Planchais, M. Straube, P. Emond, P. Langella and H. Sokol
    Citation: Microbiome 2024 12:76
  41. Microbes play vital roles across coral reefs both in the environment and inside and upon macrobes (holobionts), where they support critical functions such as nutrition and immune system modulation. These roles...

    Authors: Jake Williams, Nathalie Pettorelli, Aaron C. Hartmann, Robert A. Quinn, Laetitia Plaisance, Michael O’Mahoney, Chris P. Meyer, Katharina E. Fabricius, Nancy Knowlton and Emma Ransome
    Citation: Microbiome 2024 12:75

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    Journal Impact Factor: 13.8
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