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  1. Dark pigmented snow and glacier ice algae on glaciers and ice sheets contribute to accelerating melt. The biological controls on these algae, particularly the role of viruses, remain poorly understood. Giant v...

    Authors: Laura Perini, Katie Sipes, Athanasios Zervas, Christopher Bellas, Stefanie Lutz, Mohammad Moniruzzaman, Rey Mourot, Liane G. Benning, Martyn Tranter and Alexandre M. Anesio
    Citation: Microbiome 2024 12:91
  2. Gut microbiome metabolites are important modulators of host health and disease. However, the overall metabolic potential of the gut microbiome and interactions with the host organs have been underexplored.

    Authors: Xia Xiao, Yixuan Zhou, Xinwei Li, Jing Jin, Jerika Durham, Zifan Ye, Yipeng Wang, Bernhard Hennig and Pan Deng
    Citation: Microbiome 2024 12:90
  3. Non-toxic approaches to enhance radiotherapy outcomes are beneficial, particularly in ageing populations. Based on preclinical findings showing that high-fibre diets sensitised bladder tumours to irradiation b...

    Authors: Chee Kin Then, Salome Paillas, Aliu Moomin, Mariya D. Misheva, Rachel A. Moir, Susan M. Hay, David Bremner, Kristine S. Roberts (nee Nellany), Ellen E. Smith, Zeynab Heidari, Daniel Sescu, Xuedan Wang, Alejandro Suárez-Bonnet, Nadine Hay, Sarah L. Murdoch, Ryoichi Saito…
    Citation: Microbiome 2024 12:89
  4. During the bloom season, the colonial cyanobacterium Microcystis forms complex aggregates which include a diverse microbiome within an exopolymer matrix. Early research postulated a simple mutualism existing with...

    Authors: Haiyuan Cai, Christopher J. McLimans, Helong Jiang, Feng Chen, Lee R. Krumholz and K. David Hambright
    Citation: Microbiome 2024 12:88
  5. In environmental bacteria, the selective advantage of antibiotic resistance genes (ARGs) can be increased through co-localization with genes such as other ARGs, biocide resistance genes, metal resistance genes...

    Authors: Xuanji Li, Asker Brejnrod, Urvish Trivedi, Jakob Russel, Jonathan Thorsen, Shiraz A Shah, Gisle Alberg Vestergaard, Morten Arendt Rasmussen, Joseph Nesme, Hans Bisgaard, Jakob Stokholm and Søren Johannes Sørensen
    Citation: Microbiome 2024 12:87
  6. Parasitic helminths influence the composition of the gut microbiome. However, the microbiomes of individuals living in helminth-endemic regions are understudied. The Orang Asli, an indigenous population in Mal...

    Authors: Shushan Sargsian, Octavio Mondragón-Palomino, Alannah Lejeune, Defne Ercelen, Wen-Bing Jin, Alan Varghese, Yvonne A. L. Lim, Chun-Jun Guo, P’ng Loke and Ken Cadwell
    Citation: Microbiome 2024 12:86
  7. Left ventricular diastolic dysfunction (LVDD) is an important precursor of heart failure (HF), but little is known about its relationship with gut dysbiosis and microbial-related metabolites. By leveraging the...

    Authors: Kai Luo, Alkis Taryn, Eun-Hye Moon, Brandilyn A. Peters, Scott D. Solomon, Martha L. Daviglus, Mayank M. Kansal, Bharat Thyagarajan, Marc D. Gellman, Jianwen Cai, Robert D. Burk, Rob Knight, Robert C. Kaplan, Susan Cheng, Carlos J. Rodriguez, Qibin Qi…
    Citation: Microbiome 2024 12:85
  8. Emergence of antibiotic resistance in bacteria is an important threat to global health. Antibiotic resistance genes (ARGs) are some of the key components to define bacterial resistance and their spread in diff...

    Authors: Yao Pei, Marcus Ho-Hin Shum, Yunshi Liao, Vivian W. Leung, Yu-Nong Gong, David K. Smith, Xiaole Yin, Yi Guan, Ruibang Luo, Tong Zhang and Tommy Tsan-Yuk Lam
    Citation: Microbiome 2024 12:84
  9. Fungi and bacteria coexist in a wide variety of environments, and their interactions are now recognized as the norm in most agroecosystems. These microbial communities harbor keystone taxa, which facilitate co...

    Authors: Zexing Jin, Feiyan Jiang, Letian Wang, Stéphane Declerck, Gu Feng and Lin Zhang
    Citation: Microbiome 2024 12:83
  10. After two decades of extensive microbiome research, the current forefront of scientific exploration involves moving beyond description and classification to uncovering the intricate mechanisms underlying the c...

    Authors: Beatriz Jorrin, Timothy L. Haskett, Hayley E. Knights, Anna Martyn, Thomas J Underwood, Jessica Dolliver, Raphael Ledermann and Philip S. Poole
    Citation: Microbiome 2024 12:81

    The Correction to this article has been published in Microbiome 2024 12:92

  11. Antibiotic exposure can occur in medical settings and from environmental sources. Long-term effects of brief antibiotic exposure in early life are largely unknown.

    Authors: Yuehui Hong, Hao Li, Linkang Chen, Hongtian Su, Bin Zhang, Yu Luo, Chengji Li, Zuguo Zhao, Yiming Shao and Lianxian Guo
    Citation: Microbiome 2024 12:80
  12. Artisanal cheeses usually contain a highly diverse microbial community which can significantly impact their quality and safety. Here, we describe a detailed longitudinal study assessing the impact of ripening ...

    Authors: Elena A. Alexa, José F. Cobo-Díaz, Erica Renes, Tom F. O´Callaghan, Kieran Kilcawley, David Mannion, Iwona Skibinska, Lorena Ruiz, Abelardo Margolles, Paula Fernández-Gómez, Adrián Alvarez-Molina, Paula Puente-Gómez, Fiona Crispie, Mercedes López, Miguel Prieto, Paul D. Cotter…
    Citation: Microbiome 2024 12:78
  13. The deep sea represents the largest marine ecosystem, driving global-scale biogeochemical cycles. Microorganisms are the most abundant biological entities and play a vital role in the cycling of organic matter...

    Authors: Yan-Ru Dang, Qian-Qian Cha, Sha-Sha Liu, Shu-Yan Wang, Ping-Yi Li, Chun-Yang Li, Peng Wang, Xiu-Lan Chen, Ji-Wei Tian, Yu Xin, Yin Chen, Yu-Zhong Zhang and Qi-Long Qin
    Citation: Microbiome 2024 12:77
  14. The etiology of inflammatory bowel disease (IBD) is unclear but involves both genetics and environmental factors, including the gut microbiota. Indeed, exacerbated activation of the gastrointestinal immune sys...

    Authors: C. Danne, B. Lamas, A. Lavelle, M.-L. Michel, G. Da Costa, Hang-Phuong Pham, A. Lefevre, C. Bridonneau, M. Bredon, J. Planchais, M. Straube, P. Emond, P. Langella and H. Sokol
    Citation: Microbiome 2024 12:76
  15. Microbes play vital roles across coral reefs both in the environment and inside and upon macrobes (holobionts), where they support critical functions such as nutrition and immune system modulation. These roles...

    Authors: Jake Williams, Nathalie Pettorelli, Aaron C. Hartmann, Robert A. Quinn, Laetitia Plaisance, Michael O’Mahoney, Chris P. Meyer, Katharina E. Fabricius, Nancy Knowlton and Emma Ransome
    Citation: Microbiome 2024 12:75
  16. The equine gastrointestinal (GI) microbiome has been described in the context of various diseases. The observed changes, however, have not been linked to host function and therefore it remains unclear how spec...

    Authors: C. M. Whitfield-Cargile, H. C. Chung, M. C. Coleman, N. D. Cohen, A. M. Chamoun-Emanuelli, I. Ivanov, J. S. Goldsby, L. A. Davidson, I. Gaynanova, Y. Ni and R. S. Chapkin
    Citation: Microbiome 2024 12:74
  17. The utilization of mulberry branch fiber (MF), the largest by-product of the sericulture industry, is an important issue. Supplementation with MF as a dietary fiber for poultry may serve as a useful applicatio...

    Authors: Hong Hu, Anjian Li, Changyou Shi, Liang Chen, Zelong Zhao, Xiaojian Yin, Qiang Zhang, Ying Huang and Hongbin Pan
    Citation: Microbiome 2024 12:73
  18. Zoonotic viruses cause substantial public health and socioeconomic problems worldwide. Understanding how viruses evolve and spread within and among wildlife species is a critical step when aiming for proactive...

    Authors: Daxi Wang, Xinglou Yang, Zirui Ren, Ben Hu, Hailong Zhao, Kaixin Yang, Peibo Shi, Zhipeng Zhang, Qikai Feng, Carol Vannesa Nawenja, Vincent Obanda, Kityo Robert, Betty Nalikka, Cecilia Njeri Waruhiu, Griphin Ochieng Ochola, Samson Omondi Onyuok…
    Citation: Microbiome 2024 12:72
  19. Childhood undernutrition is a major global health challenge with devastating lifelong consequences. Linear growth stunting due to undernutrition has been linked to poor health outcomes, and mothers who experie...

    Authors: Yadeliz A. Serrano Matos, Jasmine Cano, Hamna Shafiq, Claire Williams, Julee Sunny and Carrie A. Cowardin
    Citation: Microbiome 2024 12:71
  20. Gut microbiota is significantly influenced by altitude. However, the dynamics of gut microbiota in relation to altitude remains undisclosed.

    Authors: Yang Han, Xiaoshuang Liu, Qian Jia, Jiayu Xu, Jinlong Shi, Xiang Li, Guotong Xie, Xiaojing Zhao and Kunlun He
    Citation: Microbiome 2024 12:70
  21. Ruminants are important livestock animals that have a unique digestive system comprising multiple stomach compartments. Despite significant progress in the study of microbiome in the gastrointestinal tract (GI...

    Authors: Yingjian Wu, Na Gao, Chuqing Sun, Tong Feng, Qingyou Liu and Wei-Hua Chen
    Citation: Microbiome 2024 12:69
  22. The trophic strategy is one key principle to categorize microbial lifestyles, by broadly classifying microorganisms based on the combination of their preferred carbon sources, electron sources, and electron si...

    Authors: Xiuran Yin, Guowei Zhou, Mingwei Cai, Tim Richter-Heitmann, Qing-Zeng Zhu, Mara Maeke, Ajinkya C. Kulkarni, Rolf Nimzyk, Marcus Elvert and Michael W. Friedrich
    Citation: Microbiome 2024 12:68
  23. Understanding the characteristics and structure of populations is fundamental to comprehending ecosystem processes and evolutionary adaptations. While the study of animal and plant populations has spanned a fe...

    Authors: Ramiro Logares
    Citation: Microbiome 2024 12:67
  24. Aerobic anoxygenic phototrophic (AAP) bacteria are heterotrophic bacteria that supply their metabolism with light energy harvested by bacteriochlorophyll-a-containing reaction centers. Despite their substantial c...

    Authors: Cristian Villena-Alemany, Izabela Mujakić, Livia K. Fecskeová, Jason Woodhouse, Adrià Auladell, Jason Dean, Martina Hanusová, Magdalena Socha, Carlota R. Gazulla, Hans-Joachim Ruscheweyh, Shinichi Sunagawa, Vinicius Silva Kavagutti, Adrian-Ştefan Andrei, Hans-Peter Grossart, Rohit Ghai, Michal Koblížek…
    Citation: Microbiome 2024 12:65
  25. Pre-term birth, the leading cause of neonatal mortality, has been associated with maternal periodontal disease and the presence of oral pathogens in the placenta. However, the mechanisms that underpin this lin...

    Authors: Kazune Pax, Nurcan Buduneli, Murat Alan, Pinar Meric, Onder Gurlek, Shareef M. Dabdoub and Purnima S. Kumar
    Citation: Microbiome 2024 12:64
  26. Chronic infection and consequent airway inflammation are the leading causes of morbidity and early mortality for people living with cystic fibrosis (CF). However, lower airway infections across a range of chro...

    Authors: Helen Gavillet, Lauren Hatfield, Andrew Jones, Anirban Maitra, Alexander Horsley, Damian Rivett and Christopher van der Gast
    Citation: Microbiome 2024 12:63
  27. The International Space Station (ISS) stands as a testament to human achievement in space exploration. Despite its highly controlled environment, characterised by microgravity, increased CO ...

    Authors: Pratyay Sengupta, Shobhan Karthick Muthamilselvi Sivabalan, Nitin Kumar Singh, Karthik Raman and Kasthuri Venkateswaran
    Citation: Microbiome 2024 12:62
  28. The gut microbiota is recognized as a regulator of brain development and behavioral outcomes during childhood. Nonetheless, associations between the gut microbiota and behavior are often inconsistent among stu...

    Authors: Marcel van de Wouw, Yanan Wang, Matthew L. Workentine, Elnaz Vaghef-Mehrabani, Delaney Barth, Emily M. Mercer, Deborah Dewey, Marie-Claire Arrieta, Raylene A. Reimer, Lianne Tomfohr-Madsen and Gerald F. Giesbrecht
    Citation: Microbiome 2024 12:60
  29. The host–microbiota interaction plays a crucial role in maintaining homeostasis and disease susceptibility, and microbial tryptophan metabolites are potent modulators of host physiology. However, whether and h...

    Authors: Gang Wang, Yuxin Fan, Guolong Zhang, Shuang Cai, Yonghang Ma, Lijie Yang, Yuming Wang, Haitao Yu, Shiyan Qiao and Xiangfang Zeng
    Citation: Microbiome 2024 12:59
  30. Microbiota are closely associated with human health and disease. Metaproteomics can provide a direct means to identify microbial proteins in microbiota for compositional and functional characterization. Howeve...

    Authors: Enhui Wu, Vijini Mallawaarachchi, Jinzhi Zhao, Yi Yang, Hebin Liu, Xiaoqing Wang, Chengpin Shen, Yu Lin and Liang Qiao
    Citation: Microbiome 2024 12:58
  31. Accumulating clinical evidence suggests that lung microbiome is closely linked to the progression of pulmonary diseases; however, it is still controversial which specimen type is preferred for the evaluation o...

    Authors: Lijun Zheng, Chengjun Liu, Hongjing Wang, Jun Zhang, Lejiao Mao, Xiaomei Dong, Siyao Hu, Na Li, Dandan Pi, Jingfu Qiu, Feng Xu, Chengzhi Chen and Zhen Zou
    Citation: Microbiome 2024 12:56
  32. Microorganisms are responsible for nutrient removal and resource recovery in wastewater treatment plants (WWTPs), and their diversity is often studied by 16S rRNA gene amplicon sequencing. However, this approa...

    Authors: Huifeng Hu, Jannie Munk Kristensen, Craig William Herbold, Petra Pjevac, Katharina Kitzinger, Bela Hausmann, Morten Kam Dahl Dueholm, Per Halkjaer Nielsen and Michael Wagner
    Citation: Microbiome 2024 12:55
  33. Massive amounts of sewage sludge are generated during biological sewage treatment and are commonly subjected to anaerobic digestion, land application, and landfill disposal. Concurrently, persistent organic po...

    Authors: Guofang Xu, Siyan Zhao, Matthew J. Rogers, Chen Chen and Jianzhong He
    Citation: Microbiome 2024 12:54
  34. The gut microbiome plays a crucial role in understanding complex biological mechanisms, including host resilience to stressors. Investigating the microbiota-resilience link in animals and plants holds relevanc...

    Authors: Enrico Mancin, Christian Maltecca, Yi Jian Huang, Roberto Mantovani and Francesco Tiezzi
    Citation: Microbiome 2024 12:53
  35. The rise of linezolid resistance has been widely observed both in clinical and non-clinical settings. However, there were still data gaps regarding the comprehensive prevalence and interconnections of linezoli...

    Authors: Weiyi Shen, Chang Cai, Ning Dong, Jiawei Chen, Rong Zhang and Jiachang Cai
    Citation: Microbiome 2024 12:52
  36. Partial nitritation-anammox (PNA) is a biological nitrogen removal process commonly used in wastewater treatment plants for the treatment of warm and nitrogen-rich sludge liquor from anaerobic digestion, often...

    Authors: Carolina Suarez, Tage Rosenqvist, Ivelina Dimitrova, Christopher J. Sedlacek, Oskar Modin, Catherine J. Paul, Malte Hermansson and Frank Persson
    Citation: Microbiome 2024 12:51
  37. Antibiotics notoriously perturb the gut microbiota. We treated healthy volunteers either with cefotaxime or ceftriaxone for 3 days, and collected in each subject 12 faecal samples up to day 90. Using untargete...

    Authors: Camille d’Humières, Margot Delavy, Laurie Alla, Farid Ichou, Emilie Gauliard, Amine Ghozlane, Florence Levenez, Nathalie Galleron, Benoit Quinquis, Nicolas Pons, Jimmy Mullaert, Antoine Bridier-Nahmias, Bénédicte Condamine, Marie Touchon, Dominique Rainteau, Antonin Lamazière…
    Citation: Microbiome 2024 12:50
  38. Aronia melanocarpa is a berry rich in polyphenols known for health benefits. However, the bioavailability of polyphenols has been questioned, and the individual taste acceptance of the fruit with its specific fla...

    Authors: Sonja Lackner, Alexander Mahnert, Christine Moissl-Eichinger, Tobias Madl, Hansjörg Habisch, Nathalie Meier-Allard, Christina Kumpitsch, Theresa Lahousen, Alexandra Kohlhammer-Dohr, Sabrina Mörkl, Herbert Strobl and Sandra Holasek
    Citation: Microbiome 2024 12:49
  39. Long-distance transportation, a frequent practice in the cattle industry, stresses calves and results in morbidity, mortality, and growth suppression, leading to welfare concerns and economic losses. Alkaline ...

    Authors: Jiancheng Qi, Linli Gan, Fangyuan Huang, Yue Xie, Hongrui Guo, Hengmin Cui, Junliang Deng, Liping Gou, Dongjie Cai, Chunhui Pan, Xia Lu, Ali Mujtaba Shah, Jing Fang and Zhicai Zuo
    Citation: Microbiome 2024 12:48
  40. Macroalgae, especially reds (Rhodophyta Division) and browns (Phaeophyta Division), are known for producing various halogenated compounds. Yet, the reasons underlying their production and the fate of these met...

    Authors: Anna Lavecchia, Bruno Fosso, Aschwin H. Engelen, Sara Borin, Caterina Manzari, Ernesto Picardi, Graziano Pesole and Antonio Placido
    Citation: Microbiome 2024 12:47
  41. By analyzing the proteins which are the workhorses of biological systems, metaproteomics allows us to list the taxa present in any microbiota, monitor their relative biomass, and characterize the functioning o...

    Authors: Thibaut Dumas, Roxana Martinez Pinna, Clément Lozano, Sonja Radau, Olivier Pible, Lucia Grenga and Jean Armengaud
    Citation: Microbiome 2024 12:46
  42. The severity and frequency of drought are expected to increase substantially in the coming century and dramatically reduce crop yields. Manipulation of rhizosphere microbiomes is an emerging strategy for mitig...

    Authors: Hong Yue, Xuming Sun, Tingting Wang, Ali Zhang, Dejun Han, Gehong Wei, Weining Song and Duntao Shu
    Citation: Microbiome 2024 12:44

    The Correction to this article has been published in Microbiome 2024 12:61

  43. Chondroitin sulfate (CS) has widely been used as a symptomatic slow-acting drug or a dietary supplement for the treatment and prevention of osteoarthritis. However, CS could not be absorbed after oral intake d...

    Authors: Yamin Wang, Mingfeng Ma, Wei Dai, Qingsen Shang and Guangli Yu
    Citation: Microbiome 2024 12:41

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