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  1. Authors: Denise P. Silva, Helena D. M. Villela, Henrique F. Santos, Gustavo A. S. Duarte, José Roberto Ribeiro, Angela M. Ghizelini, Caren L. S. Vilela, Phillipe M. Rosado, Carolline S. Fazolato, Erika P. Santoro, Flavia L. Carmo, Dalton S. Ximenes, Adriana U. Soriano, Caio T. C. C. Rachid, Rebecca L. Vega Thurber and Raquel S. Peixoto
    Citation: Microbiome 2024 12:105

    The original article was published in Microbiome 2021 9:118

  2. Ruminant gut microbiota are critical in ecological adaptation, evolution, and nutrition utilization because it regulates energy metabolism, promotes nutrient absorption, and improves immune function. To study ...

    Authors: Ke Zhang, Chong He, Lei Wang, Langda Suo, Mengmeng Guo, Jiazhong Guo, Ting Zhang, Yangbin Xu, Yu Lei, Gongwei Liu, Quan Qian, Yunrui Mao, Peter Kalds, Yujiang Wu, Awang Cuoji, Yuxin Yang…
    Citation: Microbiome 2024 12:104
  3. The metabolic disturbances of obesity can be mitigated by strategies modulating the gut microbiota. In this study, we sought to identify whether innate or adaptive immunity mediates the beneficial metabolic ef...

    Authors: Marina Romaní-Pérez, Inmaculada López-Almela, Clara Bullich-Vilarrubias, Zoran Evtoski, Alfonso Benítez-Páez and Yolanda Sanz
    Citation: Microbiome 2024 12:103
  4. Plant microbiota contributes to plant growth and health, including enhancing plant resistance to various diseases. Despite remarkable progress in understanding diseases resistance in plants, the precise role o...

    Authors: Yizhu Qiao, Zhendong Wang, Hong Sun, Hanyue Guo, Yang Song, He Zhang, Yang Ruan, Qicheng Xu, Qiwei Huang, Qirong Shen and Ning Ling
    Citation: Microbiome 2024 12:101
  5. Vaginal microbiota composition is associated with spontaneous preterm birth (sPTB), depending on ethnicity. Host-microbiota interactions are thought to play an important underlying role in this association bet...

    Authors: H. J. Schuster, A. C. Breedveld, S. P. F. Matamoros, R. van Eekelen, R. C. Painter, M. Kok, P. J. Hajenius, P. H. M. Savelkoul, M. van Egmond and R. van Houdt
    Citation: Microbiome 2024 12:99
  6. Recent studies have reported the identity and functions of key anaerobes involved in the degradation of organic matter (OM) in deep (> 1000 m) sulfidic marine habitats. However, due to the lack of available is...

    Authors: Subhash Yadav, Michel Koenen, Nicole J. Bale, Wietse Reitsma, Julia C. Engelmann, Kremena Stefanova, Jaap S. Sinninghe Damsté and Laura Villanueva
    Citation: Microbiome 2024 12:98
  7. Biological nitrogen fixation is a fundamental process sustaining all life on earth. While distribution and diversity of N2-fixing soil microbes have been investigated by numerous PCR amplicon sequencing of nitrog...

    Authors: Yoko Masuda, Kazumori Mise, Zhenxing Xu, Zhengcheng Zhang, Yutaka Shiratori, Keishi Senoo and Hideomi Itoh
    Citation: Microbiome 2024 12:95
  8. Microbial secondary metabolites play a crucial role in the intricate interactions within the natural environment. Among these metabolites, ribosomally synthesized and post-translationally modified peptides (Ri...

    Authors: Ying Gao, Zheng Zhong, Dengwei Zhang, Jian Zhang and Yong-Xin Li
    Citation: Microbiome 2024 12:94
  9. The gut microbiota and their hosts profoundly affect each other’s physiology and evolution. Identifying host-selected traits is crucial to understanding the processes that govern the evolving interactions betw...

    Authors: Yujie Meng, Xue Zhang, Yifan Zhai, Yuan Li, Zenghua Shao, Shanshan Liu, Chong Zhang, Xin-Hui Xing and Hao Zheng
    Citation: Microbiome 2024 12:93
  10. Dark pigmented snow and glacier ice algae on glaciers and ice sheets contribute to accelerating melt. The biological controls on these algae, particularly the role of viruses, remain poorly understood. Giant v...

    Authors: Laura Perini, Katie Sipes, Athanasios Zervas, Christopher Bellas, Stefanie Lutz, Mohammad Moniruzzaman, Rey Mourot, Liane G. Benning, Martyn Tranter and Alexandre M. Anesio
    Citation: Microbiome 2024 12:91
  11. Gut microbiome metabolites are important modulators of host health and disease. However, the overall metabolic potential of the gut microbiome and interactions with the host organs have been underexplored.

    Authors: Xia Xiao, Yixuan Zhou, Xinwei Li, Jing Jin, Jerika Durham, Zifan Ye, Yipeng Wang, Bernhard Hennig and Pan Deng
    Citation: Microbiome 2024 12:90
  12. Non-toxic approaches to enhance radiotherapy outcomes are beneficial, particularly in ageing populations. Based on preclinical findings showing that high-fibre diets sensitised bladder tumours to irradiation b...

    Authors: Chee Kin Then, Salome Paillas, Aliu Moomin, Mariya D. Misheva, Rachel A. Moir, Susan M. Hay, David Bremner, Kristine S. Roberts (nee Nellany), Ellen E. Smith, Zeynab Heidari, Daniel Sescu, Xuedan Wang, Alejandro Suárez-Bonnet, Nadine Hay, Sarah L. Murdoch, Ryoichi Saito…
    Citation: Microbiome 2024 12:89
  13. During the bloom season, the colonial cyanobacterium Microcystis forms complex aggregates which include a diverse microbiome within an exopolymer matrix. Early research postulated a simple mutualism existing with...

    Authors: Haiyuan Cai, Christopher J. McLimans, Helong Jiang, Feng Chen, Lee R. Krumholz and K. David Hambright
    Citation: Microbiome 2024 12:88
  14. In environmental bacteria, the selective advantage of antibiotic resistance genes (ARGs) can be increased through co-localization with genes such as other ARGs, biocide resistance genes, metal resistance genes...

    Authors: Xuanji Li, Asker Brejnrod, Urvish Trivedi, Jakob Russel, Jonathan Thorsen, Shiraz A Shah, Gisle Alberg Vestergaard, Morten Arendt Rasmussen, Joseph Nesme, Hans Bisgaard, Jakob Stokholm and Søren Johannes Sørensen
    Citation: Microbiome 2024 12:87
  15. Parasitic helminths influence the composition of the gut microbiome. However, the microbiomes of individuals living in helminth-endemic regions are understudied. The Orang Asli, an indigenous population in Mal...

    Authors: Shushan Sargsian, Octavio Mondragón-Palomino, Alannah Lejeune, Defne Ercelen, Wen-Bing Jin, Alan Varghese, Yvonne A. L. Lim, Chun-Jun Guo, P’ng Loke and Ken Cadwell
    Citation: Microbiome 2024 12:86
  16. Left ventricular diastolic dysfunction (LVDD) is an important precursor of heart failure (HF), but little is known about its relationship with gut dysbiosis and microbial-related metabolites. By leveraging the...

    Authors: Kai Luo, Alkis Taryn, Eun-Hye Moon, Brandilyn A. Peters, Scott D. Solomon, Martha L. Daviglus, Mayank M. Kansal, Bharat Thyagarajan, Marc D. Gellman, Jianwen Cai, Robert D. Burk, Rob Knight, Robert C. Kaplan, Susan Cheng, Carlos J. Rodriguez, Qibin Qi…
    Citation: Microbiome 2024 12:85
  17. Emergence of antibiotic resistance in bacteria is an important threat to global health. Antibiotic resistance genes (ARGs) are some of the key components to define bacterial resistance and their spread in diff...

    Authors: Yao Pei, Marcus Ho-Hin Shum, Yunshi Liao, Vivian W. Leung, Yu-Nong Gong, David K. Smith, Xiaole Yin, Yi Guan, Ruibang Luo, Tong Zhang and Tommy Tsan-Yuk Lam
    Citation: Microbiome 2024 12:84
  18. Fungi and bacteria coexist in a wide variety of environments, and their interactions are now recognized as the norm in most agroecosystems. These microbial communities harbor keystone taxa, which facilitate co...

    Authors: Zexing Jin, Feiyan Jiang, Letian Wang, Stéphane Declerck, Gu Feng and Lin Zhang
    Citation: Microbiome 2024 12:83
  19. After two decades of extensive microbiome research, the current forefront of scientific exploration involves moving beyond description and classification to uncovering the intricate mechanisms underlying the c...

    Authors: Beatriz Jorrin, Timothy L. Haskett, Hayley E. Knights, Anna Martyn, Thomas J Underwood, Jessica Dolliver, Raphael Ledermann and Philip S. Poole
    Citation: Microbiome 2024 12:81

    The Correction to this article has been published in Microbiome 2024 12:92

  20. Antibiotic exposure can occur in medical settings and from environmental sources. Long-term effects of brief antibiotic exposure in early life are largely unknown.

    Authors: Yuehui Hong, Hao Li, Linkang Chen, Hongtian Su, Bin Zhang, Yu Luo, Chengji Li, Zuguo Zhao, Yiming Shao and Lianxian Guo
    Citation: Microbiome 2024 12:80
  21. Artisanal cheeses usually contain a highly diverse microbial community which can significantly impact their quality and safety. Here, we describe a detailed longitudinal study assessing the impact of ripening ...

    Authors: Elena A. Alexa, José F. Cobo-Díaz, Erica Renes, Tom F. O´Callaghan, Kieran Kilcawley, David Mannion, Iwona Skibinska, Lorena Ruiz, Abelardo Margolles, Paula Fernández-Gómez, Adrián Alvarez-Molina, Paula Puente-Gómez, Fiona Crispie, Mercedes López, Miguel Prieto, Paul D. Cotter…
    Citation: Microbiome 2024 12:78
  22. The deep sea represents the largest marine ecosystem, driving global-scale biogeochemical cycles. Microorganisms are the most abundant biological entities and play a vital role in the cycling of organic matter...

    Authors: Yan-Ru Dang, Qian-Qian Cha, Sha-Sha Liu, Shu-Yan Wang, Ping-Yi Li, Chun-Yang Li, Peng Wang, Xiu-Lan Chen, Ji-Wei Tian, Yu Xin, Yin Chen, Yu-Zhong Zhang and Qi-Long Qin
    Citation: Microbiome 2024 12:77
  23. The etiology of inflammatory bowel disease (IBD) is unclear but involves both genetics and environmental factors, including the gut microbiota. Indeed, exacerbated activation of the gastrointestinal immune sys...

    Authors: C. Danne, B. Lamas, A. Lavelle, M.-L. Michel, G. Da Costa, Hang-Phuong Pham, A. Lefevre, C. Bridonneau, M. Bredon, J. Planchais, M. Straube, P. Emond, P. Langella and H. Sokol
    Citation: Microbiome 2024 12:76
  24. Microbes play vital roles across coral reefs both in the environment and inside and upon macrobes (holobionts), where they support critical functions such as nutrition and immune system modulation. These roles...

    Authors: Jake Williams, Nathalie Pettorelli, Aaron C. Hartmann, Robert A. Quinn, Laetitia Plaisance, Michael O’Mahoney, Chris P. Meyer, Katharina E. Fabricius, Nancy Knowlton and Emma Ransome
    Citation: Microbiome 2024 12:75
  25. The equine gastrointestinal (GI) microbiome has been described in the context of various diseases. The observed changes, however, have not been linked to host function and therefore it remains unclear how spec...

    Authors: C. M. Whitfield-Cargile, H. C. Chung, M. C. Coleman, N. D. Cohen, A. M. Chamoun-Emanuelli, I. Ivanov, J. S. Goldsby, L. A. Davidson, I. Gaynanova, Y. Ni and R. S. Chapkin
    Citation: Microbiome 2024 12:74
  26. The utilization of mulberry branch fiber (MF), the largest by-product of the sericulture industry, is an important issue. Supplementation with MF as a dietary fiber for poultry may serve as a useful applicatio...

    Authors: Hong Hu, Anjian Li, Changyou Shi, Liang Chen, Zelong Zhao, Xiaojian Yin, Qiang Zhang, Ying Huang and Hongbin Pan
    Citation: Microbiome 2024 12:73
  27. Zoonotic viruses cause substantial public health and socioeconomic problems worldwide. Understanding how viruses evolve and spread within and among wildlife species is a critical step when aiming for proactive...

    Authors: Daxi Wang, Xinglou Yang, Zirui Ren, Ben Hu, Hailong Zhao, Kaixin Yang, Peibo Shi, Zhipeng Zhang, Qikai Feng, Carol Vannesa Nawenja, Vincent Obanda, Kityo Robert, Betty Nalikka, Cecilia Njeri Waruhiu, Griphin Ochieng Ochola, Samson Omondi Onyuok…
    Citation: Microbiome 2024 12:72
  28. Childhood undernutrition is a major global health challenge with devastating lifelong consequences. Linear growth stunting due to undernutrition has been linked to poor health outcomes, and mothers who experie...

    Authors: Yadeliz A. Serrano Matos, Jasmine Cano, Hamna Shafiq, Claire Williams, Julee Sunny and Carrie A. Cowardin
    Citation: Microbiome 2024 12:71
  29. Gut microbiota is significantly influenced by altitude. However, the dynamics of gut microbiota in relation to altitude remains undisclosed.

    Authors: Yang Han, Xiaoshuang Liu, Qian Jia, Jiayu Xu, Jinlong Shi, Xiang Li, Guotong Xie, Xiaojing Zhao and Kunlun He
    Citation: Microbiome 2024 12:70
  30. Ruminants are important livestock animals that have a unique digestive system comprising multiple stomach compartments. Despite significant progress in the study of microbiome in the gastrointestinal tract (GI...

    Authors: Yingjian Wu, Na Gao, Chuqing Sun, Tong Feng, Qingyou Liu and Wei-Hua Chen
    Citation: Microbiome 2024 12:69
  31. The trophic strategy is one key principle to categorize microbial lifestyles, by broadly classifying microorganisms based on the combination of their preferred carbon sources, electron sources, and electron si...

    Authors: Xiuran Yin, Guowei Zhou, Mingwei Cai, Tim Richter-Heitmann, Qing-Zeng Zhu, Mara Maeke, Ajinkya C. Kulkarni, Rolf Nimzyk, Marcus Elvert and Michael W. Friedrich
    Citation: Microbiome 2024 12:68
  32. Understanding the characteristics and structure of populations is fundamental to comprehending ecosystem processes and evolutionary adaptations. While the study of animal and plant populations has spanned a fe...

    Authors: Ramiro Logares
    Citation: Microbiome 2024 12:67
  33. Aerobic anoxygenic phototrophic (AAP) bacteria are heterotrophic bacteria that supply their metabolism with light energy harvested by bacteriochlorophyll-a-containing reaction centers. Despite their substantial c...

    Authors: Cristian Villena-Alemany, Izabela Mujakić, Livia K. Fecskeová, Jason Woodhouse, Adrià Auladell, Jason Dean, Martina Hanusová, Magdalena Socha, Carlota R. Gazulla, Hans-Joachim Ruscheweyh, Shinichi Sunagawa, Vinicius Silva Kavagutti, Adrian-Ştefan Andrei, Hans-Peter Grossart, Rohit Ghai, Michal Koblížek…
    Citation: Microbiome 2024 12:65
  34. Pre-term birth, the leading cause of neonatal mortality, has been associated with maternal periodontal disease and the presence of oral pathogens in the placenta. However, the mechanisms that underpin this lin...

    Authors: Kazune Pax, Nurcan Buduneli, Murat Alan, Pinar Meric, Onder Gurlek, Shareef M. Dabdoub and Purnima S. Kumar
    Citation: Microbiome 2024 12:64
  35. Chronic infection and consequent airway inflammation are the leading causes of morbidity and early mortality for people living with cystic fibrosis (CF). However, lower airway infections across a range of chro...

    Authors: Helen Gavillet, Lauren Hatfield, Andrew Jones, Anirban Maitra, Alexander Horsley, Damian Rivett and Christopher van der Gast
    Citation: Microbiome 2024 12:63
  36. The International Space Station (ISS) stands as a testament to human achievement in space exploration. Despite its highly controlled environment, characterised by microgravity, increased CO ...

    Authors: Pratyay Sengupta, Shobhan Karthick Muthamilselvi Sivabalan, Nitin Kumar Singh, Karthik Raman and Kasthuri Venkateswaran
    Citation: Microbiome 2024 12:62
  37. The gut microbiota is recognized as a regulator of brain development and behavioral outcomes during childhood. Nonetheless, associations between the gut microbiota and behavior are often inconsistent among stu...

    Authors: Marcel van de Wouw, Yanan Wang, Matthew L. Workentine, Elnaz Vaghef-Mehrabani, Delaney Barth, Emily M. Mercer, Deborah Dewey, Marie-Claire Arrieta, Raylene A. Reimer, Lianne Tomfohr-Madsen and Gerald F. Giesbrecht
    Citation: Microbiome 2024 12:60
  38. The host–microbiota interaction plays a crucial role in maintaining homeostasis and disease susceptibility, and microbial tryptophan metabolites are potent modulators of host physiology. However, whether and h...

    Authors: Gang Wang, Yuxin Fan, Guolong Zhang, Shuang Cai, Yonghang Ma, Lijie Yang, Yuming Wang, Haitao Yu, Shiyan Qiao and Xiangfang Zeng
    Citation: Microbiome 2024 12:59
  39. Microbiota are closely associated with human health and disease. Metaproteomics can provide a direct means to identify microbial proteins in microbiota for compositional and functional characterization. Howeve...

    Authors: Enhui Wu, Vijini Mallawaarachchi, Jinzhi Zhao, Yi Yang, Hebin Liu, Xiaoqing Wang, Chengpin Shen, Yu Lin and Liang Qiao
    Citation: Microbiome 2024 12:58

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