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  1. Following descriptive studies on skin microbiota in health and disease, mechanistic studies on the interplay between skin and microbes are on the rise, for which experimental models are in great demand. Here, ...

    Authors: Gijs Rikken, Luca D. Meesters, Patrick A. M. Jansen, Diana Rodijk-Olthuis, Ivonne M. J. J. van Vlijmen-Willems, Hanna Niehues, Jos P. H. Smits, Peter Oláh, Bernhard Homey, Joost Schalkwijk, Patrick L. J. M. Zeeuwen and Ellen H. van den Bogaard
    Citation: Microbiome 2023 11:227
  2. Mammalian mucosal barriers secrete antimicrobial peptides (AMPs) as critical, host-derived regulators of the microbiota. However, mechanisms that support microbiota homeostasis in response to inflammatory stim...

    Authors: Ahmed Abdelgawad, Teodora Nicola, Isaac Martin, Brian A. Halloran, Kosuke Tanaka, Comfort Y. Adegboye, Pankaj Jain, Changchun Ren, Charitharth V. Lal, Namasivayam Ambalavanan, Amy E. O’Connell, Tamás Jilling and Kent A. Willis
    Citation: Microbiome 2023 11:226
  3. Plastic-degrading microbial isolates offer great potential to degrade, transform, and upcycle plastic waste. Tandem chemical and biological processing of plastic wastes has been shown to substantially increase...

    Authors: Laura Schaerer, Lindsay Putman, Isaac Bigcraft, Emma Byrne, Daniel Kulas, Ali Zolghadr, Sulihat Aloba, Rebecca Ong, David Shonnard and Stephen Techtmann
    Citation: Microbiome 2023 11:224
  4. Identification of pathogenic bacteria from clinical specimens and evaluating their antimicrobial resistance (AMR) are laborious tasks that involve in vitro cultivation, isolation, and susceptibility testing. R...

    Authors: Pieter-Jan Van Camp, V. B. Surya Prasath, David B. Haslam and Aleksey Porollo
    Citation: Microbiome 2023 11:223
  5. Host genetics can shape microbiome composition, but to what extent it does, remains unclear. Like any other complex trait, this important question can be addressed by estimating the heritability (h2) of the micro...

    Authors: Marjolein Bruijning, Julien F. Ayroles, Lucas P. Henry, Britt Koskella, Kyle M. Meyer and C. Jessica E. Metcalf
    Citation: Microbiome 2023 11:222
  6. The gut microbiota play important roles in host adaptation and evolution, but are understudied in natural population of wild mammals. To address host adaptive evolution and improve conservation efforts of thre...

    Authors: Guangping Huang, Wenyu Shi, Le Wang, Qingyue Qu, Zhenqiang Zuo, Jinfeng Wang, Fangqing Zhao and Fuwen Wei
    Citation: Microbiome 2023 11:221
  7. The gut microbiota is modulated by a combination of diet, host genetics, and sex effects. The magnitude of these effects and interactions among them is important to understanding inter-individual variability i...

    Authors: Anna C. Salvador, M. Nazmul Huda, Danny Arends, Ahmed M. Elsaadi, C. Anthony Gacasan, Gudrun A. Brockmann, William Valdar, Brian J. Bennett and David W. Threadgill
    Citation: Microbiome 2023 11:220
  8. Goat is an important livestock worldwide, which plays an indispensable role in human life by providing meat, milk, fiber, and pelts. Despite recent significant advances in microbiome studies, a comprehensive s...

    Authors: Yanhong Cao, Tong Feng, Yingjian Wu, Yixue Xu, Li Du, Teng Wang, Yuhong Luo, Yan Wang, Zhipeng Li, Zeyi Xuan, Shaomei Chen, Na Yao, Na L. Gao, Qian Xiao, Kongwei Huang, Xiaobo Wang…
    Citation: Microbiome 2023 11:219
  9. Major advances over the past decade in molecular ecology are providing access to soil fungal diversity in forest ecosystems worldwide, but the diverse functions and metabolic capabilities of this microbial com...

    Authors: Qingchao Zeng, Annie Lebreton, Lucas Auer, Xiaowu Man, Liukun Jia, Gengshen Wang, Sai Gong, Vincent Lombard, Marc Buée, Gang Wu, Yucheng Dai, Zhuliang Yang and Francis M. Martin
    Citation: Microbiome 2023 11:217
  10. High-copper diets have been widely used to promote growth performance of pigs, but excess copper supplementation can also produce negative effects on ecosystem stability and organism health. High-copper supple...

    Authors: Yang Wen, Luqing Yang, Zhenyu Wang, Xiaoyi Liu, Meng Gao, Yunhui Zhang, Junjun Wang and Pingli He
    Citation: Microbiome 2023 11:218
  11. Microbiome recruitment is influenced by plant host, but how host plant impacts the assembly, functions, and interactions of perennial plant root microbiomes is poorly understood. Here we examined prokaryotic a...

    Authors: Niuniu Ji, Di Liang, Lindsay V. Clark, Erik J. Sacks and Angela D. Kent
    Citation: Microbiome 2023 11:216
  12. The increased growth rate of young animals can lead to higher lactation performance in adult goats; however, the effects of the ruminal microbiome on the growth of young goats, and the contribution of the earl...

    Authors: Dangdang Wang, Luyu Chen, Guangfu Tang, Junjian Yu, Jie Chen, Zongjun Li, Yangchun Cao, Xinjian Lei, Lu Deng, Shengru Wu, Le Luo Guan and Junhu Yao
    Citation: Microbiome 2023 11:215
  13. Plant-beneficial bacterial inoculants are of great interest in agriculture as they have the potential to promote plant growth and health. However, the inoculation of the rhizosphere microbiome often results in...

    Authors: Daniel Garrido-Sanz, Senka Čaušević, Jordan Vacheron, Clara M. Heiman, Vladimir Sentchilo, Jan Roelof van der Meer and Christoph Keel
    Citation: Microbiome 2023 11:214
  14. Aging-related fertility decline is a prevalent concern globally. Male reproductive system aging is mainly characterized by a decrease in sperm quality and fertility. While it is known that intestinal physiolog...

    Authors: Zirun Jin, Yuzhuo Yang, Yalei Cao, Qi Wen, Yu Xi, Jianxing Cheng, Qiancheng Zhao, Jiaming Weng, Kai Hong, Hui Jiang, Jing Hang and Zhe Zhang
    Citation: Microbiome 2023 11:212
  15. Ocean warming is a leading cause of increasing episodes of coral bleaching, the dissociation between coral hosts and their dinoflagellate algal symbionts in the family Symbiodiniaceae. While the diversity and ...

    Authors: Chenying Wang, Xinqing Zheng, Hagit Kvitt, Huaxia Sheng, Danye Sun, Gaofeng Niu, Dan Tchernov and Tuo Shi
    Citation: Microbiome 2023 11:211
  16. The terrestrial subsurface is home to a significant proportion of the Earth’s microbial biomass. Our understanding about terrestrial subsurface microbiomes is almost exclusively derived from groundwater and po...

    Authors: Carl-Eric Wegner, Raphaela Stahl, Irina Velsko, Alex Hübner, Zandra Fagernäs, Christina Warinner, Robert Lehmann, Thomas Ritschel, Kai U. Totsche and Kirsten Küsel
    Citation: Microbiome 2023 11:210
  17. The existence of the gut microbiota produces an “individual drug reaction.” As members of the intestinal microbiota, probiotics, although they have prebiotic functions, may accelerate the degradation of drugs,...

    Authors: Siyuan Shen, Jun Wang, Chenchen Ma, Yanni Chen, Hao Ding and Jiachao Zhang
    Citation: Microbiome 2023 11:209
  18. The gut microbiota contributes to macrophage-mediated inflammation in adipose tissue with consumption of an obesogenic diet, thus driving the development of metabolic syndrome. There is a need to identify and ...

    Authors: N. K. Newman, Y. Zhang, J. Padiadpu, C. L. Miranda, A. A. Magana, C. P. Wong, K. A. Hioki, J. W. Pederson, Z. Li, M. Gurung, A. M. Bruce, K. Brown, G. Bobe, T. J. Sharpton, N. Shulzhenko, C. S. Maier…
    Citation: Microbiome 2023 11:208
  19. Early life plays a vital role in the development of the gut microbiome and subsequent health. While many factors that shape the gut microbiome have been described, including delivery mode, breastfeeding, and a...

    Authors: Molly Mills, Seungjun Lee, Barbara A. Piperata, Rebecca Garabed, Boseung Choi and Jiyoung Lee
    Citation: Microbiome 2023 11:207
  20. Authors: Yacine Amar, Danielle Rogner, Rafaela L. Silva, Bärbel U. Foesel, Minhaz Ud‑Dean, Ilias Lagkouvardos, Susanne A. Steimle‑Grauer, Sebastian Niedermeier, Susanne Kublik, Manja Jargosch, Matthias Heinig, Jenny Thomas, Stefanie Eyerich, Jakob D. Wikström, Michael Schloter, Kilian Eyerich…
    Citation: Microbiome 2023 11:206

    The original article was published in Microbiome 2023 11:162

  21. In the last few years, considerable attention has been focused on the plastic-degrading capability of insects and their gut microbiota in order to develop novel, effective, and green strategies for plastic was...

    Authors: Francesca De Filippis, Marco Bonelli, Daniele Bruno, Giuseppina Sequino, Aurora Montali, Marcella Reguzzoni, Edoardo Pasolli, Davide Savy, Silvana Cangemi, Vincenza Cozzolino, Gianluca Tettamanti, Danilo Ercolini, Morena Casartelli and Silvia Caccia
    Citation: Microbiome 2023 11:205
  22. Gypsum Hill Spring, located in Nunavut in the Canadian High Arctic, is a rare example of a cold saline spring arising through thick permafrost. It perennially discharges cold (~ 7 °C), hypersaline (7–8% salini...

    Authors: Elisse Magnuson, Ianina Altshuler, Nastasia J. Freyria, Richard J. Leveille and Lyle G. Whyte
    Citation: Microbiome 2023 11:203
  23. Cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL) is a cerebral small vessel disease that carries mutations in NOTCH3. The clinical manifestations are influenced...

    Authors: Sheng Liu, Xuejiao Men, Yang Guo, Wei Cai, Ruizhen Wu, Rongsui Gao, Weicong Zhong, Huating Guo, Hengfang Ruan, Shuli Chou, Junrui Mai, Suning Ping, Chao Jiang, Hongwei Zhou, Xiangyu Mou, Wenjing Zhao…
    Citation: Microbiome 2023 11:202
  24. The influence of microbiota in ecological interactions, and in particular competition, is poorly known. We studied competition between two insect species, the invasive pest Drosophila suzukii and the model Drosop...

    Authors: Antoine Rombaut, Romain Gallet, Kenza Qitout, Mukherjy Samy, Robin Guilhot, Pauline Ghirardini, Brian P. Lazzaro, Paul G. Becher, Anne Xuéreb, Patricia Gibert and Simon Fellous
    Citation: Microbiome 2023 11:201
  25. The microbiota of the upper respiratory tract is increasingly recognized as a gatekeeper of respiratory health. Despite this, the microbiota of healthy adults remains understudied. To address this gap, we inve...

    Authors: A. Cristina Paulo, João Lança, Sónia T. Almeida, Markus Hilty and Raquel Sá-Leão
    Citation: Microbiome 2023 11:199
  26. Improving feed efficiency is the most important goal for modern animal production. The regulatory mechanisms of controlling feed efficiency traits are extremely complex and include the functions related to hos...

    Authors: Zhengxiao He, Ranran Liu, Mengjie Wang, Qiao Wang, Jumei Zheng, Jiqiang Ding, Jie Wen, Alan G. Fahey and Guiping Zhao
    Citation: Microbiome 2023 11:198
  27. Heritable rumen microbiota is an important modulator of ruminant growth performance. However, no information exists to date on host genetics-rumen microbiota interactions and their association with phenotype i...

    Authors: Weimin Wang, Yukun Zhang, Xiaoxue Zhang, Chong Li, Lvfeng Yuan, Deyin Zhang, Yuan Zhao, Xiaolong Li, Jiangbo Cheng, Changchun Lin, Liming Zhao, Jianghui Wang, Dan Xu, Xiangpeng Yue, Wanhong Li, Xiuxiu Wen…
    Citation: Microbiome 2023 11:197
  28. Methane (CH4) is a major greenhouse gas, and ruminants are one of the sources of CH4 which is produced by the rumen microbiota. Modification of the rumen microbiota compositions will impact the CH4 production. In...

    Authors: Yao Fu, Songyang Yao, Tiankun Wang, Yongqiang Lu, Huigang Han, Xuening Liu, Dongying Lv, Xiao Ma, Shengyu Guan, Yujun Yao, Yunjie Liu, Haiying Yu, Shengli Li, Ning Yang and Guoshi Liu
    Citation: Microbiome 2023 11:196

    The Correction to this article has been published in Microbiome 2023 11:242

  29. There is a growing body of evidence suggesting that disturbance of the gut-brain axis may be one of the potential causes of major depressive disorder (MDD). However, the effects of antidepressants on the gut m...

    Authors: Yaping Wang, Jingjing Zhou, Junbin Ye, Zuoli Sun, Yi He, Yingxin Zhao, Siyu Ren, Guofu Zhang, Min Liu, Peng Zheng, Gang Wang and Jian Yang
    Citation: Microbiome 2023 11:195
  30. Bifidobacteria represent an important gut commensal in humans, particularly during initial microbiome assembly in the first year of life. Enrichment of Bifidobacterium is mediated though the utilization of human ...

    Authors: Jules A. Larke, Britta E. Heiss, Amy M. Ehrlich, Diana H. Taft, Helen E. Raybould, David A. Mills and Carolyn M. Slupsky
    Citation: Microbiome 2023 11:194
  31. There is an increasing interest in investigating the human gut virome for its influence on the gut bacterial community and its putative influence on the trajectory towards health or disease. Most gut virome st...

    Authors: Xichuan Zhai, Josué L. Castro-Mejía, Alex Gobbi, Antonios Aslampaloglou, Witold Kot, Dennis S. Nielsen and Ling Deng
    Citation: Microbiome 2023 11:193
  32. As microbiome research has progressed, it has become clear that most, if not all, eukaryotic organisms are hosts to microbiomes composed of prokaryotes, other eukaryotes, and viruses. Fungi have only recently ...

    Authors: Julia M. Kelliher, Aaron J. Robinson, Reid Longley, Leah Y. D. Johnson, Buck T. Hanson, Demosthenes P. Morales, Guillaume Cailleau, Pilar Junier, Gregory Bonito and Patrick S. G. Chain
    Citation: Microbiome 2023 11:192
  33. Anchialine environments, in which oceanic water mixes with freshwater in coastal aquifers, are characterised by stratified water columns with complex physicochemical profiles. These environments, also known as...

    Authors: Timothy M. Ghaly, Amaranta Focardi, Liam D. H. Elbourne, Brodie Sutcliffe, William Humphreys, Ian T. Paulsen and Sasha G. Tetu
    Citation: Microbiome 2023 11:190
  34. The transition from water to air is a key event in the evolution of many marine organisms to access new food sources, escape water hypoxia, and exploit the higher and temperature-independent oxygen concentrati...

    Authors: Marco Fusi, David K. Ngugi, Ramona Marasco, Jenny Marie Booth, Massimiliano Cardinale, Luciano Sacchi, Emanuela Clementi, Xinyuan Yang, Elisa Garuglieri, Stilianos Fodelianakis, Grégoire Michoud and Daniele Daffonchio
    Citation: Microbiome 2023 11:189
  35. Mangrove wetlands are coastal ecosystems with important ecological features and provide habitats for diverse microorganisms with key roles in nutrient and biogeochemical cycling. However, the overall metabolic...

    Authors: Zhi-Feng Zhang, Li-Rui Liu, Yue-Ping Pan, Jie Pan and Meng Li
    Citation: Microbiome 2023 11:188
  36. Heterotrophic microbes in the Southern Ocean are challenged by the double constraint of low concentrations of organic carbon (C) and iron (Fe). These essential elements are tightly coupled in cellular processe...

    Authors: Pavla Debeljak, Barbara Bayer, Ying Sun, Gerhard J. Herndl and Ingrid Obernosterer
    Citation: Microbiome 2023 11:187
  37. Exploring metagenomic contigs and “binning” them into metagenome-assembled genomes (MAGs) are essential for the delineation of functional and evolutionary guilds within microbial communities. Despite the advan...

    Authors: Michael J. Pavia, Abhinav Chede, Zijun Wu, Hinsby Cadillo-Quiroz and Qiyun Zhu
    Citation: Microbiome 2023 11:186
  38. Reef-building corals are acutely threatened by ocean warming, calling for active interventions to reduce coral bleaching and mortality. Corals associate with a wide diversity of bacteria which can influence co...

    Authors: Talisa Doering, Kshitij Tandon, Sanjida H. Topa, Sacha J. Pidot, Linda L. Blackall and Madeleine J. H. van Oppen
    Citation: Microbiome 2023 11:185
  39. The gut microbiome is closely associated with health status, and any microbiota dysbiosis could considerably impact the host’s health. In addition, many active consortium projects have generated many reference...

    Authors: Jinlin Zhu, Heqiang Xie, Zixin Yang, Jing Chen, Jialin Yin, Peijun Tian, Hongchao Wang, Jianxin Zhao, Hao Zhang, Wenwei Lu and Wei Chen
    Citation: Microbiome 2023 11:184
  40. Some microbiota compositions are associated with negative outcomes, including among others, obesity, allergies, and the failure to respond to treatment. Microbiota manipulation or supplementation can restore a...

    Authors: Oshrit Shtossel, Sondra Turjeman, Alona Riumin, Michael R. Goldberg, Arnon Elizur, Yarin Bekor, Hadar Mor, Omry Koren and Yoram Louzoun
    Citation: Microbiome 2023 11:181
  41. The gut microbiota of the giant panda (Ailuropoda melanoleuca), a global symbol of conservation, are believed to be involved in the host’s dietary switch to a fibrous bamboo diet. However, their exact roles are s...

    Authors: Feilong Deng, Chengdong Wang, Desheng Li, Yunjuan Peng, Linhua Deng, Yunxiang Zhao, Zhihao Zhang, Ming Wei, Kai Wu, Jiangchao Zhao and Ying Li
    Citation: Microbiome 2023 11:180
  42. The fungal component of the human gut microbiome, also known as the mycobiome, plays a vital role in intestinal ecology and human health. However, the overall structure of the gut mycobiome as well as the inte...

    Authors: Senying Lai, Yan Yan, Yanni Pu, Shuchun Lin, Jian-Ge Qiu, Bing-Hua Jiang, Marisa Isabell Keller, Mingyu Wang, Peer Bork, Wei-Hua Chen, Yan Zheng and Xing-Ming Zhao
    Citation: Microbiome 2023 11:179
  43. A growing body of evidence suggests that the gut microbiota is strongly linked to general human health. Microbiome-directed interventions, such as diet and exercise, are acknowledged as a viable and achievable...

    Authors: Jiarui Chen, Sara Leal Siliceo, Yueqiong Ni, Henrik B. Nielsen, Aimin Xu and Gianni Panagiotou
    Citation: Microbiome 2023 11:178

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