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  1. Bisphenol A (BPA) is an environmental contaminant with endocrine-disrupting properties that induce fetal growth restriction (FGR). Previous studies on pregnant ewes revealed that BPA exposure causes placental ...

    Authors: Hao Zhang, Xia Zha, Bei Zhang, Yi Zheng, Mabrouk Elsabagh, Hongrong Wang and Mengzhi Wang
    Citation: Microbiome 2024 12:28
    Content type: Research Published on:

  2. Seagrasses offer various ecosystem services and possess high levels of primary productivity. However, the development of mariculture has affected the homeostasis of seagrass meadow ecosystems. Plant-microbiome...

    Authors: Hao Sun, Tianyu Wang, Shuai Liu, Xiaoyu Tang, Jie Sun, Xuerui Liu, Ye Zhao, Pingping Shen and Yanying Zhang
    Citation: Microbiome 2024 12:27
    Content type: Research Published on:

  3. Horizontal gene transfer (HGT) describes the transmission of DNA outside of direct ancestral lineages. The process is best characterised within the bacterial kingdom and can enable the acquisition of genetic t...

    Authors: Anna H. Behling, Brooke C. Wilson, Daniel Ho, Wayne S. Cutfield, Tommi Vatanen and Justin M. O’Sullivan
    Citation: Microbiome 2024 12:26
    Content type: Research Published on:

  4. Chickens are one of the most widely farmed animals worldwide and play a crucial role in meat and egg production. Gut microbiota is essential for chickens’ health, disease, growth, and egg production. However, ...

    Authors: Hongye Shen, Tinghui Wang, Weiwei Dong, Guoping Sun, Jun Liu, Nan Peng and Shumiao Zhao
    Citation: Microbiome 2024 12:25
    Content type: Research Published on:

  5. The effect of microbes on their human host is often mediated through changes in metabolite concentrations. As such, multiple tools have been proposed to predict metabolite concentrations from microbial taxa fr...

    Authors: Oshrit Shtossel, Omry Koren, Iris Shai, Ehud Rinott and Yoram Louzoun
    Citation: Microbiome 2024 12:24
    Content type: Research Published on:

  7. The gut microbiome undergoes primary ecological succession over the course of early life before achieving ecosystem stability around 3 years of age. These maturational patterns have been well-characterized for...

    Authors: Emily M. Mercer, Hena R. Ramay, Shirin Moossavi, Isabelle Laforest-Lapointe, Myrtha E. Reyna, Allan B. Becker, Elinor Simons, Piush J. Mandhane, Stuart E. Turvey, Theo J. Moraes, Malcolm R. Sears, Padmaja Subbarao, Meghan B. Azad and Marie-Claire Arrieta
    Citation: Microbiome 2024 12:22
    Content type: Research Published on:

  9. The gut microbiota is a critical factor in the regulation of host health, but the relationship between the differential resistance of hosts to pathogens and the interaction of gut microbes is not yet clear. He...

    Authors: Jun-Hong Xing, Tian-Ming Niu, Bo-Shi Zou, Gui-Lian Yang, Chun-Wei Shi, Qing-Song Yan, Ming-Jie Sun, Tong Yu, Shu-Min Zhang, Xi-Ze Feng, Shu-Hui Fan, Hai-Bin Huang, Jun-Hong Wang, Ming-Han Li, Yan-Long Jiang, Jian-Zhong Wang…
    Citation: Microbiome 2024 12:20
    Content type: Research Published on:

  10. Infant gut microbiota is highly malleable, but the long-term longitudinal impact of antibiotic exposure in early life, together with the mode of delivery on infant gut microbiota and resistome, is not extensiv...

    Authors: Dhrati V. Patangia, Ghjuvan Grimaud, Carol-Anne O’Shea, C. A. Ryan, Eugene Dempsey, Catherine Stanton and R. Paul Ross
    Citation: Microbiome 2024 12:19
    Content type: Research Published on:

  11. The widespread availability of antiretroviral therapy (ART) has dramatically reduced mortality and improved life expectancy for people living with HIV (PLWH). However, even with HIV-1 suppression, chronic immu...

    Authors: Angela Sofia Burkhart Colorado, Alessandro Lazzaro, Charles Preston Neff, Nichole Nusbacher, Kathryn Boyd, Suzanne Fiorillo, Casey Martin, Janet C. Siebert, Thomas B. Campbell, Margaret Borok, Brent E. Palmer and Catherine Lozupone
    Citation: Microbiome 2024 12:18
    Content type: Research Published on:

  12. The recent recognition of the importance of the microbiome to the host’s health and well-being has yielded efforts to develop therapies that aim to shift the microbiome from a disease-associated state to a hea...

    Authors: Eitan E. Asher and Amir Bashan
    Citation: Microbiome 2024 12:17
    Content type: Research Published on:

  13. Many arthropods rely on their gut microbiome to digest plant material, which is often low in nitrogen but high in complex polysaccharides. Detritivores, such as millipedes, live on a particularly poor diet, bu...

    Authors: Julius Eyiuche Nweze, Vladimír Šustr, Andreas Brune and Roey Angel
    Citation: Microbiome 2024 12:16
    Content type: Research Published on:

  14. Biofilms in sulfide-rich springs present intricate microbial communities that play pivotal roles in biogeochemical cycling. We studied chemoautotrophically based biofilms that host diverse CPR bacteria and gro...

    Authors: Luis E. Valentin-Alvarado, Sirine C. Fakra, Alexander J. Probst, Jonathan R. Giska, Alexander L. Jaffe, Luke M. Oltrogge, Jacob West-Roberts, Joel Rowland, Michael Manga, David F. Savage, Chris Greening, Brett J. Baker and Jillian F. Banfield
    Citation: Microbiome 2024 12:15
    Content type: Research Published on:

  16. Plant microbiomes play crucial roles in nutrient cycling and plant growth, and are shaped by a complex interplay between plants, microbes, and the environment. The role of bacteria as mediators of the 400-mill...

    Authors: Changfeng Zhang, Marcel G. A. van der Heijden, Bethany K. Dodds, Thi Bich Nguyen, Jelle Spooren, Alain Valzano-Held, Marco Cosme and Roeland L. Berendsen
    Citation: Microbiome 2024 12:13
    Content type: Research Published on:

    The Correction to this article has been published in Microbiome 2024 12:30

  17. The increasing prevalence of neurocognitive disorders (NCDs) in the aging population worldwide has become a significant concern due to subjectivity of evaluations and the lack of precise diagnostic methods and...

    Authors: Yan Han, Xinglin Zeng, Lin Hua, Xingping Quan, Ying Chen, Manfei Zhou, Yaochen Chuang, Yang Li, Shengpeng Wang, Xu Shen, Lai Wei, Zhen Yuan and Yonghua Zhao
    Citation: Microbiome 2024 12:12
    Content type: Research Published on:

  18. Fonio (Digitaria exilis), an orphan millet crop, is the oldest indigenous crop in West Africa. Although the yield is low due to pre-domestication characteristics, the quick maturation time, drought tolerance, and...

    Authors: Naheed Tabassum, Hanin Ibrahim Ahmed, Sabiha Parween, Arsheed H. Sheikh, Maged M. Saad, Simon G. Krattinger and Heribert Hirt
    Citation: Microbiome 2024 12:11
    Content type: Research Published on:

  19. The visual organ plays a crucial role in sensing environmental information. However, its mucosal surfaces are constantly exposed to selective pressures from aquatic or airborne pathogens and microbial communit...

    Authors: Weiguang Kong, Gaofeng Cheng, Jiafeng Cao, Jiaqian Yu, Xinyou Wang and Zhen Xu
    Citation: Microbiome 2024 12:10
    Content type: Research Published on:

    The Correction to this article has been published in Microbiome 2024 12:23

  20. Antarctica and its unique biodiversity are increasingly at risk from the effects of global climate change and other human influences. A significant recent element underpinning strategies for Antarctic conserva...

    Authors: Gilda Varliero, Pedro H. Lebre, Byron Adams, Steven L. Chown, Peter Convey, Paul G. Dennis, Dandan Fan, Belinda Ferrari, Beat Frey, Ian D. Hogg, David W. Hopkins, Weidong Kong, Thulani Makhalanyane, Gwynneth Matcher, Kevin K. Newsham, Mark I. Stevens…
    Citation: Microbiome 2024 12:9
    Content type: Research Published on:

  22. The hadal sediment, found at an ocean depth of more than 6000 m, is geographically isolated and under extremely high hydrostatic pressure, resulting in a unique ecosystem. Thaumarchaeota are ubiquitous marine ...

    Authors: Ru-Yi Zhang, Yan-Ren Wang, Ru-Long Liu, Sung-Keun Rhee, Guo-Ping Zhao and Zhe-Xue Quan
    Citation: Microbiome 2024 12:7
    Content type: Research Published on:

  23. Our previous study revealed marked differences in tongue images between individuals with gastric cancer and those without gastric cancer. However, the biological mechanism of tongue images as a disease indicat...

    Authors: Jiahui Chen, Yingying Sun, Jie Li, Mengge Lyu, Li Yuan, Jiancheng Sun, Shangqi Chen, Can Hu, Qing Wei, Zhiyuan Xu, Tiannan Guo and Xiangdong Cheng
    Citation: Microbiome 2024 12:6
    Content type: Research Published on:

  24. The observation that the intestinal microbiota is  central in the development of IBD suggests that dietary fiber, the microbiota’s primary source of nourishment, could play a central role in these diseases. Ac...

    Authors: Erica Bonazzi, Alexis Bretin, Lucile Vigué, Fuhua Hao, Andrew D. Patterson, Andrew T. Gewirtz and Benoit Chassaing
    Citation: Microbiome 2024 12:5
    Content type: Research Published on:

  25. The overgrowth of Desulfovibrio, an inflammation promoting flagellated bacteria, has been found in ulcerative colitis (UC) patients. However, the molecular mechanism in promoting colitis remains unestablished.

    Authors: Runxiang Xie, Yu Gu, Mengfan Li, Lingfeng Li, Yunwei Yang, Yue Sun, Bingqian Zhou, Tianyu Liu, Sinan Wang, Wentian Liu, Rongcun Yang, Xiaomin Su, Weilong Zhong, Bangmao Wang and Hailong Cao
    Citation: Microbiome 2024 12:4
    Content type: Research Published on:

  26. In anoxic coastal and marine sediments, degradation of methylated compounds is the major route to the production of methane, a powerful greenhouse gas. Dimethylsulphide (DMS) is the most abundant biogenic orga...

    Authors: S. L. Tsola, Y. Zhu, Y. Chen, I. A. Sanders, C. K. Economou, V. Brüchert and Ö. Eyice
    Citation: Microbiome 2024 12:3
    Content type: Research Published on:

  27. Aquaculture plays an important role in global protein supplies and food security. The ban on antibiotics as feed additive proposes urgent need to develop alternatives. Gut microbiota plays important roles in t...

    Authors: Ming Li, Hui Liang, Hongwei Yang, Qianwen Ding, Rui Xia, Jie Chen, Wenhao Zhou, Yalin Yang, Zhen Zhang, Yuanyuan Yao, Chao Ran and Zhigang Zhou
    Citation: Microbiome 2024 12:2
    Content type: Research Published on:

  28. The rhizosheath, a cohesive soil layer firmly adhering to plant roots, plays a vital role in facilitating water and mineral uptake. In pearl millet, rhizosheath formation is genetically controlled and influenc...

    Authors: Abdelrahman Alahmad, Mourad Harir, Sylvain Fochesato, Joris Tulumello, Alesia Walker, Mohamed Barakat, Papa Mamadou Sitor Ndour, Philippe Schmitt-Kopplin, Laurent Cournac, Laurent Laplaze, Thierry Heulin and Wafa Achouak
    Citation: Microbiome 2024 12:1
    Content type: Research Published on:

  29. Inflammatory bowel disease (IBD) patients experience recurrent episodes of intestinal inflammation and often follow an unpredictable disease course. Mucosal colonization with adherent-invasive Escherichia coli (A...

    Authors: Rachel M. Bleich, Chuang Li, Shan Sun, Ju-Hyun Ahn, Belgin Dogan, Cassandra J. Barlogio, Christopher A. Broberg, Adrienne R. Franks, Emily Bulik-Sullivan, Ian M. Carroll, Kenneth W. Simpson, Anthony A. Fodor and Janelle C. Arthur
    Citation: Microbiome 2023 11:277
    Content type: Research Published on:

  30. Leakages of cold, methane-rich fluids from subsurface reservoirs to the sea floor are termed cold seeps. Recent exploration of the deep sea has shed new light on the microbial communities in cold seeps. Howeve...

    Authors: Danrui Wang, Jiangtao Li, Lei Su, Wenli Shen, Kai Feng, Xi Peng, Zhujun Wang, Bo Zhao, Zheng Zhang, Zhaojing Zhang, Étienne Yergeau and Ye Deng
    Citation: Microbiome 2023 11:276
    Content type: Research Published on:

  31. The accuracy of internal-transcribed-spacer (ITS) and shotgun metagenomics has not been robustly evaluated, and the effect of diet on the composition and function of the bacterial and fungal gut microbiome in ...

    Authors: Zixuan Xie, Aleix Canalda-Baltrons, Christophe d’Enfert and Chaysavanh Manichanh
    Citation: Microbiome 2023 11:275
    Content type: Research Published on:

  32. Insects living in nutritionally poor environments often establish long-term relationships with intracellular bacteria that supplement their diets and improve their adaptive and invasive powers. Even though the...

    Authors: Mariana Galvão Ferrarini, Agnès Vallier, Carole Vincent-Monégat, Elisa Dell’Aglio, Benjamin Gillet, Sandrine Hughes, Ophélie Hurtado, Guy Condemine, Anna Zaidman-Rémy, Rita Rebollo, Nicolas Parisot and Abdelaziz Heddi
    Citation: Microbiome 2023 11:274
    Content type: Research Published on:

  33. Oral infection with cysts is the main transmission route of Toxoplasma gondii (T. gondii), which leads to lethal intestinal inflammation. It has been widely recognized that T. gondii infection alters the composit...

    Authors: Jing Yang, Songhao Liu, Qian Zhao, Xiaobing Li and Kangfeng Jiang
    Citation: Microbiome 2023 11:273
    Content type: Research Published on:

  34. Fungi play a crucial role in ecosystems, and they have been widely considered a promising source for natural compounds that are crucial for drug discovery. Fungi have a high diversity, but about 95% of them re...

    Authors: Meng Li, Mubashar Raza, Shuang Song, Lingwei Hou, Zhi-Feng Zhang, Min Gao, Jun-En Huang, Fang Liu and Lei Cai
    Citation: Microbiome 2023 11:272
    Content type: Research Published on:

  35. Climate change has accelerated the occurrence and severity of heatwaves in the Mediterranean Sea and poses a significant threat to the octocoral species that form the foundation of marine animal forests (MAFs)...

    Authors: Camille Prioux, Romie Tignat-Perrier, Ophélie Gervais, Tristan Estaque, Quentin Schull, Stéphanie Reynaud, Eric Béraud, Bastien Mérigot, Anaïs Beauvieux, Maria-Isabelle Marcus, Justine Richaume, Olivier Bianchimani, Adrien Cheminée, Denis Allemand and Christine Ferrier-Pagès
    Citation: Microbiome 2023 11:271
    Content type: Research Published on:

  36. Active hydrothermal vents create extreme conditions characterized by high temperatures, low pH levels, and elevated concentrations of heavy metals and other trace elements. These conditions support unique ecos...

    Authors: Wenchao Deng, Zihao Zhao, Yufang Li, Rongguang Cao, Mingming Chen, Kai Tang, Deli Wang, Wei Fan, Anyi Hu, Guangcheng Chen, Chen-Tung Arthur Chen and Yao Zhang
    Citation: Microbiome 2023 11:270
    Content type: Research Published on:

  37. Ileal pouch-anal anastomosis (IPAA) is the standard of care after total proctocolectomy for ulcerative colitis (UC). Around 50% of patients will experience pouchitis, an idiopathic inflammatory condition. Anti...

    Authors: Zhi-Luo Deng, Dietmar H. Pieper, Andreas Stallmach, Arndt Steube, Marius Vital, Michael Reck and Irene Wagner-Döbler
    Citation: Microbiome 2023 11:269
    Content type: Research Published on:

  38. Oral squamous cell carcinoma (SCC) is associated with oral microbial dysbiosis. In this unique study, we compared pre- to post-treatment salivary microbiome in patients with SCC by 16S rRNA gene sequencing and...

    Authors: Marcell Costa de Medeiros, Stephanie The, Emily Bellile, Nickole Russo, Ligia Schmitd, Erika Danella, Priyanka Singh, Rajat Banerjee, Christine Bassis, George R. Murphy III, Maureen A. Sartor, Isabelle Lombaert, Thomas M. Schmidt, Avi Eisbruch, Carol Anne Murdoch-Kinch, Laura Rozek…
    Citation: Microbiome 2023 11:268
    Content type: Research Published on:

  39. A Lactobacillus-dominated vaginal microbiome provides the first line of defense against adverse genital tract health outcomes. However, there is limited understanding of the mechanisms by which the vaginal microb...

    Authors: Johanna B. Holm, Michael T. France, Pawel Gajer, Bing Ma, Rebecca M. Brotman, Michelle Shardell, Larry Forney and Jacques Ravel
    Citation: Microbiome 2023 11:259
    Content type: Research Published on:

    The Correction to this article has been published in Microbiome 2024 12:21

  40. Studies on the gut microbiota of animals have largely focused on vertebrates. The transmission modes of commensal intestinal bacteria in mammals have been well studied. However, in gastropods, the relationship...

    Authors: Datao Lin, Jinni Hong, Benjamin Sanogo, Shuling Du, Suoyu Xiang, Jerome Ho-Lam Hui, Tao Ding, Zhongdao Wu and Xi Sun
    Citation: Microbiome 2023 11:267
    Content type: Research Published on:

  41. Many studies have investigated how nanoplastics (NPs) exposure mediates nerve and intestinal toxicity through a dysregulated brain-gut axis interaction, but there are few studies aimed at alleviating those eff...

    Authors: Miaomiao Teng, Yunxia Li, Xiaoli Zhao, Jason C. White, Lihui Zhao, Jiaqi Sun, Wentao Zhu and Fengchang Wu
    Citation: Microbiome 2023 11:266
    Content type: Research Published on:

  42. The RCA (Roseobacter clade affiliated) cluster belongs to the family Roseobacteracea and represents a major Roseobacter lineage in temperate to polar oceans. Despite its prevalence and abundance, only a few genom...

    Authors: Yanting Liu, Thorsten Brinkhoff, Martine Berger, Anja Poehlein, Sonja Voget, Lucas Paoli, Shinichi Sunagawa, Rudolf Amann and Meinhard Simon
    Citation: Microbiome 2023 11:265
    Content type: Research Published on:

  44. Inquiry of microbiota involvement in kidney stone disease (KSD) has largely focussed on potential oxalate handling abilities by gut bacteria and the increased association with antibiotic exposure. By systemati...

    Authors: Kait F. Al, Benjamin R. Joris, Brendan A. Daisley, John A. Chmiel, Jennifer Bjazevic, Gregor Reid, Gregory B. Gloor, John D. Denstedt, Hassan Razvi and Jeremy P. Burton
    Citation: Microbiome 2023 11:263
    Content type: Research Published on:

  45. Diet-induced dyslipidemia is linked to the gut microbiota, but the causality of microbiota-host interaction affecting lipid metabolism remains controversial. Here, the humanized dyslipidemia mice model was suc...

    Authors: Hongtao Xu, Fang Fang, Kaizhang Wu, Jiangping Song, Yaqian Li, Xingyu Lu, Juncheng Liu, Liuyang Zhou, Wenqing Yu, Fei Yu and Jie Gao
    Citation: Microbiome 2023 11:262
    Content type: Research Published on:

  46. Declines in plant biodiversity often have negative consequences for plant community productivity, and it becomes increasingly acknowledged that this may be driven by shifts in soil microbial communities. So fa...

    Authors: Siqi Tao, G. F. (Ciska) Veen, Naili Zhang, Tianhe Yu and Laiye Qu
    Citation: Microbiome 2023 11:261
    Content type: Research Published on:

  47. The modulation of immune responses by probiotics is crucial for local and systemic immunity. Recent studies have suggested a correlation between gut microbiota and lung immunity, known as the gut–lung axis. Ho...

    Authors: Seungil Kim, Sohyeon Lee, Tae-Young Kim, Su-Hyun Lee, Sang-Uk Seo and Mi-Na Kweon
    Citation: Microbiome 2023 11:260
    Content type: Research Published on:

  48. While many studies have reported that the structure of the gut and skin microbiota is driven by both species-specific and habitat-specific factors, the relative importance of host-specific versus environmental...

    Authors: Javad Sadeghi, Subba Rao Chaganti, Timothy B. Johnson and Daniel D. Heath
    Citation: Microbiome 2023 11:258
    Content type: Research Published on:

  49. The microbiota of multicellular organisms undergoes considerable changes during host ontogeny but the general mechanisms that control community assembly and succession are poorly understood. Here, we use bacte...

    Authors: H. Domin, J. Zimmermann, J. Taubenheim, G. Fuentes Reyes, L. Saueressig, D. Prasse, M. Höppner, R. A. Schmitz, U. Hentschel, C. Kaleta and S. Fraune
    Citation: Microbiome 2023 11:257
    Content type: Research Published on:

  50. Parkinson’s disease (PD) is a common chronic neurological disorder with a high risk of disability and no cure. Periodontitis is an infectious bacterial disease occurring in periodontal supporting tissues. Stud...

    Authors: Xue-Bing Bai, Shuo Xu, Lu-Jun Zhou, Xiao-Qian Meng, Yu-Lin Li, Yan-Lin Chen, Yi-Han Jiang, Wen-Zhen Lin, Bo-Yan Chen, Lin-Juan Du, Guo-Cai Tian, Yan Liu, Sheng-Zhong Duan and Ya-Qin Zhu
    Citation: Microbiome 2023 11:254
    Content type: Research Published on:
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