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Microbiome

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  1. Content type: Research

    Excesses of antibiotic resistance genes (ARGs), which are regarded as emerging environmental pollutants, have been observed in various environments. The incidence of ARGs in drinking water causes potential ris...

    Authors: Liping Ma, Bing Li, Xiao-Tao Jiang, Yu-Lin Wang, Yu Xia, An-Dong Li and Tong Zhang

    Citation: Microbiome 2017 5:154

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  2. Content type: Research

    Most studies describing the human gut microbiome in healthy and diseased states have emphasized the bacterial component, but the fungal microbiome (i.e., the mycobiome) is beginning to gain recognition as a fu...

    Authors: Andrea K. Nash, Thomas A. Auchtung, Matthew C. Wong, Daniel P. Smith, Jonathan R. Gesell, Matthew C. Ross, Christopher J. Stewart, Ginger A. Metcalf, Donna M. Muzny, Richard A. Gibbs, Nadim J. Ajami and Joseph F. Petrosino

    Citation: Microbiome 2017 5:153

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  3. Content type: Research

    The microbiota of the bovine upper respiratory tract has been recently characterized, but no data for the lower respiratory tract are available. A major health problem in bovine medicine is infectious bronchop...

    Authors: Isabella Nicola, Francesco Cerutti, Elena Grego, Iride Bertone, Paola Gianella, Antonio D’Angelo, Simone Peletto and Claudio Bellino

    Citation: Microbiome 2017 5:152

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  4. Content type: Research

    Colorectal cancer is a worldwide health problem. Despite growing evidence that members of the gut microbiota can drive tumorigenesis, little is known about what happens to it after treatment for an adenoma or ...

    Authors: Marc A. Sze, Nielson T. Baxter, Mack T. Ruffin IV, Mary A. M. Rogers and Patrick D. Schloss

    Citation: Microbiome 2017 5:150

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  5. Content type: Correction

    Following publication of the original article [1], the authors pointed out that the figure shown as figure S1 is actually figure S2 and vice versa. Figure S1 should show the barcharts, and figure S2 should sho...

    Authors: Frederik Schulz, Emiley A. Eloe-Fadrosh, Robert M. Bowers, Jessica Jarett, Torben Nielsen, Natalia N. Ivanova, Nikos C. Kyrpides and Tanja Woyke

    Citation: Microbiome 2017 5:149

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    The original article was published in Microbiome 2017 5:140

  6. Content type: Research

    Colonization by the pathogen Clostridium difficile often occurs in the background of a disrupted microbial community. Identifying specific organisms conferring resistance to invasion by C. difficile is desirable ...

    Authors: Sepideh Pakpour, Amit Bhanvadia, Roger Zhu, Abhimanyu Amarnani, Sean M. Gibbons, Thomas Gurry, Eric J. Alm and Laura A. Martello

    Citation: Microbiome 2017 5:148

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  7. Content type: Research

    It is clear that specific intestinal bacteria are involved in the development of different premalignant conditions along the gastrointestinal tract. An analysis of the microbial constituents in the context of ...

    Authors: Shan Li, Gwenny M. Fuhler, Nahush BN, Tony Jose, Marco J. Bruno, Maikel P. Peppelenbosch and Sergey R. Konstantinov

    Citation: Microbiome 2017 5:147

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  8. Content type: Research

    The microbiome provides multiple benefits to animal hosts that can profoundly impact health and behavior. Microbiomes are well-characterized in humans and other animals in controlled settings, yet assessments ...

    Authors: Douglas S. Pearce, Brian A. Hoover, Sarah Jennings, Gabrielle A. Nevitt and Kathryn M. Docherty

    Citation: Microbiome 2017 5:146

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  9. Content type: Research

    The possible impact of changes in diet composition on the intestinal microbiome is mostly studied after some days of adaptation to the diet of interest. The question arises if a few days are enough to reflect ...

    Authors: Bruno Tilocca, Katharina Burbach, Charlotte M. E. Heyer, Ludwig E. Hoelzle, Rainer Mosenthin, Volker Stefanski, Amélia Camarinha-Silva and Jana Seifert

    Citation: Microbiome 2017 5:144

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  10. Content type: Research

    Recently, the importance of the lung microbiota during health and disease has been examined in humans and in small animal models. Whilst sheep have been proposed as an appropriate large animal model for studyi...

    Authors: Laura Glendinning, David Collie, Steven Wright, Kenny M. D. Rutherford and Gerry McLachlan

    Citation: Microbiome 2017 5:145

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  11. Content type: Research

    The ExoMars 2016 mission, consisting of the Trace Gas Orbiter and the Schiaparelli lander, was launched on March 14 2016 from Baikonur, Kazakhstan and reached its destination in October 2016. The Schiaparelli ...

    Authors: Kaisa Koskinen, Petra Rettberg, Rüdiger Pukall, Anna Auerbach, Lisa Wink, Simon Barczyk, Alexandra Perras, Alexander Mahnert, Diana Margheritis, Gerhard Kminek and Christine Moissl-Eichinger

    Citation: Microbiome 2017 5:143

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  12. Content type: Research

    Shotgun metagenomic sequencing is increasingly utilized as a tool to evaluate ecological-level dynamics of antimicrobial resistance and virulence, in conjunction with microbiome analysis. Interest in use of th...

    Authors: Noelle R. Noyes, Maggie E. Weinroth, Jennifer K. Parker, Chris J. Dean, Steven M. Lakin, Robert A. Raymond, Pablo Rovira, Enrique Doster, Zaid Abdo, Jennifer N. Martin, Kenneth L. Jones, Jaime Ruiz, Christina A. Boucher, Keith E. Belk and Paul S. Morley

    Citation: Microbiome 2017 5:142

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  13. Content type: Research

    Alcohol abuse has deleterious effects on human health by disrupting the functions of many organs and systems. Gut microbiota has been implicated in the pathogenesis of alcohol-related liver diseases, with its ...

    Authors: Veronika B. Dubinkina, Alexander V. Tyakht, Vera Y. Odintsova, Konstantin S. Yarygin, Boris A. Kovarsky, Alexander V. Pavlenko, Dmitry S. Ischenko, Anna S. Popenko, Dmitry G. Alexeev, Anastasiya Y. Taraskina, Regina F. Nasyrova, Evgeny M. Krupitsky, Nino V. Shalikiani, Igor G. Bakulin, Petr L. Shcherbakov, Lyubov O. Skorodumova…

    Citation: Microbiome 2017 5:141

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  14. Content type: Short report

    The bacterial tree of life has recently undergone significant expansion, chiefly from candidate phyla retrieved through genome-resolved metagenomics. Bypassing the need for genome availability, we present a sn...

    Authors: Frederik Schulz, Emiley A. Eloe-Fadrosh, Robert M. Bowers, Jessica Jarett, Torben Nielsen, Natalia N. Ivanova, Nikos C. Kyrpides and Tanja Woyke

    Citation: Microbiome 2017 5:140

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  15. Content type: Research

    The individual, together with its environment, has been reported as the main force driving composition and structure of skin microbiota in healthy dogs. Therefore, one of the major concerns when analyzing cani...

    Authors: Anna Cuscó, Janelle M. Belanger, Liza Gershony, Alma Islas-Trejo, Kerinne Levy, Juan F. Medrano, Armand Sánchez, Anita M. Oberbauer and Olga Francino

    Citation: Microbiome 2017 5:139

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  16. Content type: Research

    The limited understanding of microbial characteristics in moisture-damaged buildings impedes efforts to clarify which adverse health effects in the occupants are associated with the damage and to develop effec...

    Authors: Balamuralikrishna Jayaprakash, Rachel I. Adams, Pirkka Kirjavainen, Anne Karvonen, Asko Vepsäläinen, Maria Valkonen, Kati Järvi, Michael Sulyok, Juha Pekkanen, Anne Hyvärinen and Martin Täubel

    Citation: Microbiome 2017 5:138

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  17. Content type: Research

    Metallo-β-lactamases are bacterial enzymes that provide resistance to carbapenems, the most potent class of antibiotics. These enzymes are commonly encoded on mobile genetic elements, which, together with thei...

    Authors: Fanny Berglund, Nachiket P. Marathe, Tobias Österlund, Johan Bengtsson-Palme, Stathis Kotsakis, Carl-Fredrik Flach, D G Joakim Larsson and Erik Kristiansson

    Citation: Microbiome 2017 5:134

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  18. Content type: Correction

    Following publication of the original article [1], the authors were alerted by a colleague of a column duplication in Table 1. Since the summary row was correct, though, the interpretation and the conclusion of t...

    Authors: Dagmara W. Lewandowska, Osvaldo Zagordi, Fabienne-Desirée Geissberger, Verena Kufner, Stefan Schmutz, Jürg Böni, Karin J. Metzner, Alexandra Trkola and Michael Huber

    Citation: Microbiome 2017 5:137

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    The original article was published in Microbiome 2017 5:94

  19. Content type: Correction

    Authors: Antonios Michas, Gisle Vestergaard, Kathleen Trautwein, Pavlos Avramidis, Dimitris G. Hatzinikolaou, Constantinos E. Vorgias, Heinz Wilkes, Ralf Rabus, Michael Schloter and Anne Schöler

    Citation: Microbiome 2017 5:136

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    The original article was published in Microbiome 2017 5:118

  20. Content type: Research

    Prebiotics are non-digestible food ingredients that enhance the growth of certain microbes within the gut microbiota. Prebiotic consumption generates immune-modulatory effects that are traditionally thought to...

    Authors: Richard Y. Wu, Pekka Määttänen, Scott Napper, Erin Scruten, Bo Li, Yuhki Koike, Kathene C. Johnson-Henry, Agostino Pierro, Laura Rossi, Steven R. Botts, Michael G. Surette and Philip M. Sherman

    Citation: Microbiome 2017 5:135

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  21. Content type: Research

    Several biotic and abiotic factors have been reported to influence the proliferation of microbes, including Legionella pneumophila, in hot water premise plumbing systems, but their combined effects have not been ...

    Authors: Caitlin R. Proctor, Dongjuan Dai, Marc A. Edwards and Amy Pruden

    Citation: Microbiome 2017 5:130

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  22. Content type: Short report

    Nearly a quarter of emerging infectious diseases identified in the last century are arthropod-borne. Although ticks and insects can carry pathogenic microorganisms, non-pathogenic microbes make up the majority...

    Authors: Cory A. Gall, Glen A. Scoles, Krisztian Magori, Kathleen L. Mason and Kelly A. Brayton

    Citation: Microbiome 2017 5:133

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  23. Content type: Research

    The Mars500 project was conceived as the first full duration simulation of a crewed return flight to Mars. For 520 days, six crew members lived confined in a specifically designed spacecraft mock-up. The herei...

    Authors: Petra Schwendner, Alexander Mahnert, Kaisa Koskinen, Christine Moissl-Eichinger, Simon Barczyk, Reinhard Wirth, Gabriele Berg and Petra Rettberg

    Citation: Microbiome 2017 5:129

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