Skip to main content

Articles

Page 2 of 28

  1. Disease resistance phenotypes are associated with immune regulatory functions and immune tolerance and have implications for both the livestock industry and human health. Microbiota plays an essential role in ...

    Authors: Xuan Zhao, Lin Jiang, Xiuyu Fang, Zhiqiang Guo, Xiaoxu Wang, Baoming Shi and Qingwei Meng
    Citation: Microbiome 2022 10:115
  2. Short-chain fatty acids (SCFAs) derived from gut bacteria are associated with protective roles in diseases ranging from obesity to colorectal cancers. Intake of microbially accessible dietary fibers (prebiotic...

    Authors: Zachary C. Holmes, Max M. Villa, Heather K. Durand, Sharon Jiang, Eric P. Dallow, Brianna L. Petrone, Justin D. Silverman, Pao-Hwa Lin and Lawrence A. David
    Citation: Microbiome 2022 10:114
  3. Anthropogenic activities have increased the inputs of atmospheric reactive nitrogen (N) into terrestrial ecosystems, affecting soil carbon stability and microbial communities. Previous studies have primarily e...

    Authors: Xingyu Ma, Tengxu Wang, Zhou Shi, Nona R. Chiariello, Kathryn Docherty, Christopher B. Field, Jessica Gutknecht, Qun Gao, Yunfu Gu, Xue Guo, Bruce A. Hungate, Jiesi Lei, Audrey Niboyet, Xavier Le Roux, Mengting Yuan, Tong Yuan…
    Citation: Microbiome 2022 10:112

    The Correction to this article has been published in Microbiome 2022 10:144

  4. Antibiotic resistome has been found to strongly interact with the core microbiota in the human gut, yet little is known about how antibiotic resistance genes (ARGs) correlate with certain microbes in large riv...

    Authors: Jiawen Wang, Rui Pan, Peiyan Dong, Shufeng Liu, Qian Chen, Alistair G. L. Borthwick, Liyu Sun, Nan Xu and Jinren Ni
    Citation: Microbiome 2022 10:111
  5. Ubiquitous and diverse marine microorganisms utilise the abundant organosulfur molecule dimethylsulfoniopropionate (DMSP), the main precursor of the climate-active gas dimethylsulfide (DMS), as a source of car...

    Authors: Jingli Liu, Chun-Xu Xue, Jinyan Wang, Andrew T. Crombie, Ornella Carrión, Andrew W. B. Johnston, J. Colin Murrell, Ji Liu, Yanfen Zheng, Xiao-Hua Zhang and Jonathan D. Todd
    Citation: Microbiome 2022 10:110
  6. B and K2 vitamins, essential nutrients in host metabolism, can be synthesized by the rumen microbiome in ruminants and subsequently absorbed by the host. However, the B and K2 vitamin biosynthesis by the whole ga...

    Authors: Qian Jiang, Limei Lin, Fei Xie, Wei Jin, Weiyun Zhu, Min Wang, Qiang Qiu, Zhipeng Li, Junhua Liu and Shengyong Mao
    Citation: Microbiome 2022 10:109
  7. Rhizodeposits regulate rhizosphere interactions, processes, nutrient and energy flow, and plant-microbe communication and thus play a vital role in maintaining soil and plant health. However, it remains unclea...

    Authors: Pengfa Li, Jia Liu, Muhammad Saleem, Guilong Li, Lu Luan, Meng Wu and Zhongpei Li
    Citation: Microbiome 2022 10:108
  8. Intestinal inflammation is prevalent in chicken, which results in decreased growth performance and considerable economic losses. Accumulated findings established the close relationship between gut microbiota a...

    Authors: Xiaolong Zhang, Muhammad Akhtar, Yan Chen, Ziyu Ma, Yuyun Liang, Deshi Shi, Ranran Cheng, Lei Cui, Yafang Hu, Abdallah A. Nafady, Abdur Rahman Ansari, El-Sayed M. Abdel-Kafy and Huazhen Liu
    Citation: Microbiome 2022 10:107

    The Correction to this article has been published in Microbiome 2022 10:116

  9. Growing up with siblings has been linked to numerous health outcomes and is also an important determinant for the developing microbiota. Nonetheless, research into the role of having siblings on the developing...

    Authors: Emil Dalgaard Christensen, Mathis Hjort Hjelmsø, Jonathan Thorsen, Shiraz Shah, Tamsin Redgwell, Christina Egeø Poulsen, Urvish Trivedi, Jakob Russel, Shashank Gupta, Bo L. Chawes, Klaus Bønnelykke, Søren Johannes Sørensen, Morten Arendt Rasmussen, Hans Bisgaard and Jakob Stokholm
    Citation: Microbiome 2022 10:106
  10. Inflammatory bowel diseases (IBDs) including Crohn’s disease (CD) and ulcerative colitis (UC) are characterized by chronic and debilitating gut inflammation. Altered bacterial communities of the intestine are ...

    Authors: Anshul Sinha, Yue Li, Mohammadali Khan Mirzaei, Michael Shamash, Rana Samadfam, Irah L. King and Corinne F. Maurice
    Citation: Microbiome 2022 10:105
  11. The 16S rRNA gene is used extensively in bacterial phylogenetics, in species delineation, and now widely in microbiome studies. However, the gene suffers from intragenomic heterogeneity, and reports of recombi...

    Authors: Hayley B. Hassler, Brett Probert, Carson Moore, Elizabeth Lawson, Richard W. Jackson, Brook T. Russell and Vincent P. Richards
    Citation: Microbiome 2022 10:104
  12. Aberrations in the preterm microbiome following antibiotic therapy have been reported in previous studies. The objective of this study was to probe potential underlying mechanisms between this observation and ...

    Authors: Yanping Xu, Olivia Milburn, Traci Beiersdorfer, Lizhong Du, Henry Akinbi and David B. Haslam
    Citation: Microbiome 2022 10:103
  13. Recent studies have provided insights into the persistence and succession of microbes aboard the International Space Station (ISS), notably the dominance of Klebsiella pneumoniae. However, the interactions betwee...

    Authors: Rachita K. Kumar, Nitin Kumar Singh, Sanjaay Balakrishnan, Ceth W. Parker, Karthik Raman and Kasthuri Venkateswaran
    Citation: Microbiome 2022 10:102
  14. Phosphorus (P) is one of the most essential macronutrients on the planet, and microorganisms (including bacteria and archaea) play a key role in P cycling in all living things and ecosystems. However, our comp...

    Authors: Jiaxiong Zeng, Qichao Tu, Xiaoli Yu, Lu Qian, Cheng Wang, Longfei Shu, Fei Liu, Shengwei Liu, Zhijian Huang, Jianguo He, Qingyun Yan and Zhili He
    Citation: Microbiome 2022 10:101
  15. The International Space Station (ISS) is a unique and complex built environment with the ISS surface microbiome originating from crew and cargo or from life support recirculation in an almost entirely closed s...

    Authors: Camilla Urbaniak, Michael D. Morrison, James B. Thissen, Fathi Karouia, David J. Smith, Satish Mehta, Crystal Jaing and Kasthuri Venkateswaran
    Citation: Microbiome 2022 10:100
  16. Well-balanced interactions between gut microbiota and the immune system are essential to prevent chronic intestinal inflammation, as observed in inflammatory bowel diseases (IBD). Toll-like receptor 4 (TLR4) f...

    Authors: Yaojiang Liu, Min Yang, Li Tang, Fengchao Wang, Shengjie Huang, Shuang Liu, Yuanyuan Lei, Sumin Wang, Zhuo Xie, Wei Wang, Xiaoyan Zhao, Bo Tang and Shiming Yang
    Citation: Microbiome 2022 10:98
  17. Herbivorous insects acquire their gut microbiota from diverse sources, and these microorganisms play significant roles in insect hosts’ tolerance to plant secondary defensive compounds. Camellia weevil (Curculio ...

    Authors: Shouke Zhang, Zikun Li, Jinping Shu, Huaijun Xue, Kai Guo and Xudong Zhou
    Citation: Microbiome 2022 10:97
  18. Bariatric surgery remains the most effective therapy for adiposity reduction and remission of type 2 diabetes. Although different bariatric procedures associate with pronounced shifts in the gut microbiota, th...

    Authors: Julia Münzker, Nadine Haase, Andreas Till, Robert Sucher, Sven-Bastiaan Haange, Linda Nemetschke, Thorsten Gnad, Elisabeth Jäger, Jiesi Chen, Sjaak J. Riede, Rima Chakaroun, Lucas Massier, Peter Kovacs, Mario Ost, Ulrike Rolle-Kampczyk, Nico Jehmlich…
    Citation: Microbiome 2022 10:96
  19. Pronounced heterogeneity of age trajectories has been identified as a hallmark of the gut microbiota in humans and has been explained by marked changes in lifestyle and health condition. Comparatively, age-rel...

    Authors: Baptiste Sadoughi, Dominik Schneider, Rolf Daniel, Oliver Schülke and Julia Ostner
    Citation: Microbiome 2022 10:95
  20. The gut microbiota is reportedly involved in the progression and chemoresistance of various human malignancies. However, the underlying mechanisms behind how it exerts some effect on prostate cancer, as an ext...

    Authors: Weibo Zhong, Kaihui Wu, Zining Long, Xumin Zhou, Chuanfan Zhong, Shuo Wang, Houhua Lai, Yufei Guo, Daojun Lv, Jianming Lu and Xiangming Mao
    Citation: Microbiome 2022 10:94
  21. Pancreatic cancer is a deadly disease with limited diagnostic and treatment options. Not all populations are affected equally, as disparities exist in pancreatic cancer prevalence, treatment and outcomes. Rece...

    Authors: Kelly M. Herremans, Andrea N. Riner, Miles E. Cameron, Kelley L. McKinley, Eric W. Triplett, Steven J. Hughes and Jose G. Trevino
    Citation: Microbiome 2022 10:93
  22. Prokaryote-virus interactions play key roles in driving biogeochemical cycles. However, little is known about the drivers shaping their interaction network structures, especially from the host features. Here, ...

    Authors: Zhenghua Liu, Qingyun Yan, Chengying Jiang, Juan Li, Huahua Jian, Lu Fan, Rui Zhang, Xiang Xiao, Delong Meng, Xueduan Liu, Jianjun Wang and Huaqun Yin
    Citation: Microbiome 2022 10:92
  23. Innate immunity genes have been reported to affect susceptibility to inflammatory bowel diseases (IBDs) and colitis in mice. Dectin-1, a receptor for fungal cell wall β-glucans, has been clearly implicated in ...

    Authors: Yazhou Wang, Madeleine Spatz, Gregory Da Costa, Chloé Michaudel, Alexia Lapiere, Camille Danne, Allison Agus, Marie-Laure Michel, Mihai G. Netea, Philippe Langella, Harry Sokol and Mathias L. Richard
    Citation: Microbiome 2022 10:91
  24. The Scarabaeidae insect Protaetia brevitarsis (PB) has recently gained increasing research interest as a resource insect because its larvae can effectively convert decaying organic matter to plant growth-promotin...

    Authors: Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Jie Zhang and Changlong Shu
    Citation: Microbiome 2022 10:90
  25. Haematopoietic stem cell transplantation is a curative procedure for a variety of conditions. Despite major advances, a plethora of adverse clinical outcomes can develop post-transplantation including graft-ve...

    Authors: Gintare Vaitkute, Gordana Panic, Dagmar G. Alber, Intan Faizura-Yeop, Elaine Cloutman-Green, Jonathan Swann, Paul Veys, Joseph F. Standing, Nigel Klein and Mona Bajaj-Elliott
    Citation: Microbiome 2022 10:89
  26. Clostridioides difficile infection (CDI) is the most common hospital acquired infection in the USA, with recurrence rates > 15%. Although primary CDI has been extensively linked to gut microbial dysbiosis, less i...

    Authors: Jennifer J. Dawkins, Jessica R. Allegretti, Travis E. Gibson, Emma McClure, Mary Delaney, Lynn Bry and Georg K. Gerber
    Citation: Microbiome 2022 10:87
  27. The relationship between host conditions and microbiome profiles, typically characterized by operational taxonomic units (OTUs), contains important information about the microbial role in human health. Traditi...

    Authors: Caizhi Huang, Benjamin J. Callahan, Michael C. Wu, Shannon T. Holloway, Hayden Brochu, Wenbin Lu, Xinxia Peng and Jung-Ying Tzeng
    Citation: Microbiome 2022 10:86
  28. The interaction of organisms with their surrounding microbial communities influences many biological processes, a notable example of which is the shaping of the immune system in early life. In the Pacific oyst...

    Authors: Manon Fallet, Caroline Montagnani, Bruno Petton, Luc Dantan, Julien de Lorgeril, Sébastien Comarmond, Cristian Chaparro, Eve Toulza, Simon Boitard, Jean-Michel Escoubas, Agnès Vergnes, Jacqueline Le Grand, Ingo Bulla, Yannick Gueguen, Jérémie Vidal-Dupiol, Christoph Grunau…
    Citation: Microbiome 2022 10:85
  29. The increased use of metagenomics and single-cell genomics led to the discovery of organisms from phyla with no cultivated representatives and proposed new microbial lineages such as the candidate phyla radiat...

    Authors: Maria-Cecilia Chiriac, Paul-Adrian Bulzu, Adrian-Stefan Andrei, Yusuke Okazaki, Shin-ichi Nakano, Markus Haber, Vinicius Silva Kavagutti, Paul Layoun, Rohit Ghai and Michaela M. Salcher
    Citation: Microbiome 2022 10:84
  30. In modern animal husbandry, breeders pay increasing attention to improving sow nutrition during pregnancy and lactation to favor the health of neonates. Sow milk is a main food source for piglets during their ...

    Authors: Leli Wang, Qihang Liu, Yuwei Chen, Xinlei Zheng, Chuni Wang, Yining Qi, Yachao Dong, Yue Xiao, Cang Chen, Taohong Chen, Qiuyun Huang, Zongzhao Zhai, Cimin Long, Huansheng Yang, Jianzhong Li, Lei Wang…
    Citation: Microbiome 2022 10:83
  31. Gut microbiota plays important roles in health maintenance and diseases. Physical exercise has been demonstrated to be able to modulate gut microbiota. However, the potential role of gut microbiome in exercise...

    Authors: Qiulian Zhou, Jiali Deng, Xue Pan, Danni Meng, Yujiao Zhu, Yuzheng Bai, Chao Shi, Yi Duan, Tianhui Wang, Xinli Li, Joost PG Sluijter and Junjie Xiao
    Citation: Microbiome 2022 10:82
  32. Novel strategies for anaerobic bacterial isolations from human faecal samples and various initiatives to generate culture collections of gut-derived bacteria have instigated considerable interest for the devel...

    Authors: Anaïs Biclot, Geert R. B. Huys, Rodrigo Bacigalupe, Kevin D’hoe, Doris Vandeputte, Gwen Falony, Raul Y. Tito and Jeroen Raes
    Citation: Microbiome 2022 10:80
  33. Antimicrobials are often used to prevent and treat diarrhea induced by enteroaggregative Escherichia coli (EAEC) in young ruminants. However, drug overuse or misuse accelerates the spread of multidrug-resistant e...

    Authors: Zhiyuan He, Yulin Ma, Sirui Yang, Shuyuan Zhang, Shuai Liu, Jianxin Xiao, Yajing Wang, Wei Wang, Hongjian Yang, Shengli Li and Zhijun Cao
    Citation: Microbiome 2022 10:79
  34. Termites primarily feed on lignocellulose or soil in association with specific gut microbes. The functioning of the termite gut microbiota is partly understood in a handful of wood-feeding pest species but rem...

    Authors: Jigyasa Arora, Yukihiro Kinjo, Jan Šobotník, Aleš Buček, Crystal Clitheroe, Petr Stiblik, Yves Roisin, Lucia Žifčáková, Yung Chul Park, Ki Yoon Kim, David Sillam-Dussès, Vincent Hervé, Nathan Lo, Gaku Tokuda, Andreas Brune and Thomas Bourguignon
    Citation: Microbiome 2022 10:78
  35. Dietary fiber is an integral part of a healthy diet, but questions remain about the mechanisms that underlie effects and the causal contributions of the gut microbiota. Here, we performed a 6-week exploratory ...

    Authors: Edward C. Deehan, Zhengxiao Zhang, Alessandra Riva, Anissa M. Armet, Maria Elisa Perez-Muñoz, Nguyen K. Nguyen, Jacqueline A. Krysa, Benjamin Seethaler, Yuan-Yuan Zhao, Janis Cole, Fuyong Li, Bela Hausmann, Andreas Spittler, Julie-Anne Nazare, Nathalie M. Delzenne, Jonathan M. Curtis…
    Citation: Microbiome 2022 10:77
  36. Although there is now an extensive understanding of the diversity of microbial life on earth through culture-independent metagenomic DNA sequence analyses, the isolation and cultivation of microbes remains cri...

    Authors: Sijia Liu, Christina D. Moon, Nan Zheng, Sharon Huws, Shengguo Zhao and Jiaqi Wang
    Citation: Microbiome 2022 10:76
  37. The deep sea harbors the majority of the microbial biomass in the ocean and is a key site for organic matter (OM) remineralization and storage in the biosphere. Microbial metabolism in the deep ocean is greatl...

    Authors: Rulong Liu, Xing Wei, Weizhi Song, Li Wang, Junwei Cao, Jiaxin Wu, Torsten Thomas, Tao Jin, Zixuan Wang, Wenxia Wei, Yuli Wei, Haofeng Zhai, Cheng Yao, Ziyi Shen, Jiangtao Du and Jiasong Fang
    Citation: Microbiome 2022 10:75
  38. The global pork industry is continuously affected by infectious diseases that can result in large-scale mortality, trade restrictions, and major reductions in production. Nevertheless, the cause of many infect...

    Authors: Xinyi Huang, Weichen Wu, Xiaoxiao Tian, Xin Hou, Xingyang Cui, Yihong Xiao, Qiulin Jiao, Pei Zhou, Liqiang Liu, Weilin Shi, Ligong Chen, Yue Sun, Yongbo Yang, Jianxin Chen, Guihong Zhang, Jinling Liu…
    Citation: Microbiome 2022 10:73
  39. The spread of antibiotic resistance genes (ARGs) has been of global concern as one of the greatest environmental threats. The gut microbiome of animals has been found to be a large reservoir of ARGs, which is ...

    Authors: Huihui Sun, Xiaohuan Mu, Kexun Zhang, Haoyu Lang, Qinzhi Su, Xingan Li, Xin Zhou, Xue Zhang and Hao Zheng
    Citation: Microbiome 2022 10:69
  40. Altered intestinal microbiota composition in later life is associated with inflammaging, declining tissue function, and increased susceptibility to age-associated chronic diseases, including neurodegenerative ...

    Authors: Aimée Parker, Stefano Romano, Rebecca Ansorge, Asmaa Aboelnour, Gwenaelle Le Gall, George M. Savva, Matthew G. Pontifex, Andrea Telatin, David Baker, Emily Jones, David Vauzour, Steven Rudder, L. Ashley Blackshaw, Glen Jeffery and Simon R. Carding
    Citation: Microbiome 2022 10:68
  41. Phytoplankton communities significantly contribute to global biogeochemical cycles of elements and underpin marine food webs. Although their uncultured genomic diversity has been estimated by planetary-scale m...

    Authors: Anthony Duncan, Kerrie Barry, Chris Daum, Emiley Eloe-Fadrosh, Simon Roux, Katrin Schmidt, Susannah G. Tringe, Klaus U. Valentin, Neha Varghese, Asaf Salamov, Igor V. Grigoriev, Richard M. Leggett, Vincent Moulton and Thomas Mock
    Citation: Microbiome 2022 10:67

Annual Journal Metrics