Andrade KR, Boratto PP, Rodrigues FP, Silva LC, Dornas FP, Pilotto MR, et al. Oysters as hot spots for mimivirus isolation. Arch Virol. 2015;160(2):477–82.
Article
CAS
Google Scholar
Apprill A. Marine animal microbiomes: toward understanding host–microbiome interactions in a changing ocean. Front Mar Sci. 2017;4:222.
Article
Google Scholar
Asplund M, Kjartansdóttir KR, Mollerup S, Vinner L, Fridholm H, Herrera JA, et al. Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries. Clin Microbiol Infect. 2019;25(10):1277–85.
Article
CAS
Google Scholar
Bar-On YM, Phillips R, Milo R. The biomass distribution on Earth. Proc Natl Acad Sci U S A. 2018;115(25):6506–11.
Article
CAS
Google Scholar
Bedford AJ, Williams G, Bellamy AR. Virus accumulation by the rock oyster Crassostrea glomerata. Appl Environ Microbiol. 1978;35(6):1012–8.
Article
CAS
Google Scholar
Biagini P, Bendinelli M, Hino S, Kakkola L, Mankertz A, Niel C. Family Circoviridae. In: King AMQ, Adams MJ, Carstens EB, Leftkowitz EJ, editors. Virus taxonomy. IXth Report of the International Committee on Taxonomy of Viruses. London: Elsevier; 2011. 99–123.
Google Scholar
Binga EK, Lasken RS, Neufeld JD. Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology. ISME J. 2008;2(3):233–41.
Article
CAS
Google Scholar
Bochow S, Condon K, Elliman J, Owens L. First complete genome of an Ambidensovirus; Cherax quadricarinatus densovirus, from freshwater crayfish Cherax quadricarinatus. Mar Genom. 2015;24:305–12.
Article
Google Scholar
Bodewes R, Hapsari R, Rubio Garcia A, Sanchez Contreras GJ, van de Bildt MW, de Graaf M, et al. Molecular epidemiology of seal parvovirus, 1988–2014. PLoS One. 2014;9(11):e112129.
Article
Google Scholar
Breitbart M, Bonnain C, Malki K, Sawaya NA. Phage puppet masters of the marine microbial realm. Nat Microbiol. 2018;3(7):754–66. https://doi.org/10.1038/s41564-018-0166-y.
Article
CAS
Google Scholar
Breitbart M. Marine viruses: truth or dare. Ann Rev Mar Sci. 2012;4:425–48.
Article
Google Scholar
Brum JR, Ignacio-Espinoza JC, Roux S, Doulcier G, Acinas SG, Alberti A, Sullivan MB. Patterns and ecological drivers of ocean viral communities. Science. 2015;348(6237):1261498.
Article
Google Scholar
Camarillo-Guerrero LF, Almeida A, Rangel-Pineros G, Finn RD, Lawley TD. Massive expansion of human gut bacteriophage diversity. Cell. 2021;184(4):1098-1109.e9.
Article
CAS
Google Scholar
Castelán-Sánchez HG, Lopéz-Rosas I, García-Suastegui WA, Peralta R, Dobson ADW, Batista-García RA, et al. Extremophile deep-sea viral communities from hydrothermal vents: structural and functional analysis. Mar Genom. 2019;46:16–28.
Article
Google Scholar
Chabi-Jesus C, Najar A, Fontenele RS, Kumari SG, Ramos-González PL, Freitas-Astúa J, et al. Viruses representing two new genomovirus species identified in citrus from Tunisia. Arch Virol. 2020;165(5):1225–9.
Article
CAS
Google Scholar
Castelán-Sánchez HG, Meza-Rodríguez PM, Carrillo E, Ríos-Vázquez DI, Liñan-Torres A, Batista-García RA, et al. The microbial composition in circumneutral thermal springs from Chignahuapan, Puebla, Mexico reveals the presence of particular sulfur-oxidizing bacterial and viral communities. Microorganisms. 2020;8(11):1677. https://doi.org/10.3390/microorganisms8111677.
Article
CAS
Google Scholar
Chen S, Zhou Y, Chen Y, Gu J. fastp: an ultrafast all-in-one FASTQ preprocessor. Bioinformatics. 2018;34(17):i884–90.
de Lorgeril J, Lucasson A, Petton B, Toulza E, Montagnani C, Clerissi C, et al. Immune-suppression by OsHV-1 viral infection causes fatal bacteraemia in Pacific oysters. Nat Commun. 2018;9(1):4215.
Article
Google Scholar
Dell’Anno A, Corinaldesi C, Danovaro R. Virus decomposition provides an important contribution to benthic deep-sea ecosystem functioning. Proc Natl Acad Sci U S A. 2015;112(16):E2014–9.
CAS
Google Scholar
Doszpoly A, Tarján Z, Glávits R, Müller T, Benkő M. Full genome sequence of a novel circo-like virus detected in an adult European eel Anguilla anguilla showing signs of cauliflower disease. Dis Aquat Organ. 2014;109:107–15.
Article
CAS
Google Scholar
Drexler JF, Reber U, Muth D, Herzog P, Annan A, Ebach F, et al. Human parvovirus 4 in nasal and fecal specimens from children. Ghana Emerg Infect Dis. 2012;18(10):1650–3.
Article
Google Scholar
Dupont S, Lokmer A, Corre E, Auguet JC, Petton B, Toulza E. Oyster hemolymph is a complex and dynamic ecosystem hosting bacteria, protists and viruses. Animal Microbiome. 2020;2(1):1–16.
Article
Google Scholar
Fan X, Yang C, Li W, Bai X, Zhou X, Xie H, et al. SMOOTH-seq: single-cell genome sequencing of human cells on a third-generation sequencing platform. Genome Biol. 2021;22(1):195.
Article
CAS
Google Scholar
Farley CA, Banfield WG, Kasnic G Jr, Foster WS. Oyster herpes-type virus. Science. 1972;178(4062):759–60.
Article
CAS
Google Scholar
Firth C, Charleston MA, Duffy S, Shapiro B, Holmes EC. Insights into the evolutionary history of an emerging livestock pathogen: porcine circovirus 2. J Virol. 2009;83:12813–21.
Article
CAS
Google Scholar
Fontenele R, Lacorte C, Lamas N, Schmidlin K, Varsani A, Ribeiro S. Single stranded DNA viruses associated with capybara faeces sampled in Brazil. Viruses. 2019;11:710.
Article
CAS
Google Scholar
Fuhrman JA. Marine viruses and their biogeochemical and ecological effects. Nature. 1999;399:541−8.
Gao F, Jiang JZ, Wang JY, Wei HY. Real-time quantitative isothermal detection of Ostreid herpesvirus-1 DNA in Scapharca subcrenata using recombinase polymerase amplification. J Virol Methods. 2018;255:71–5.
Article
CAS
Google Scholar
Ge Y, Jing Z, Diao Q, He JZ, Liu YJ. Host species and geography differentiate honeybee gut bacterial communities by changing the relative contribution of community assembly processes. mBio. 2021;12(3):e0075121.
Article
Google Scholar
Geoghegan JL, Di Giallonardo F, Wille M, Ortiz-Baez AS, Costa VA, Ghaly T, et al. Virome composition in marine fish revealed by meta-transcriptomics. Virus Evol. 2021;7(1):veab005.
Article
Google Scholar
Gregory AC, Zayed AA, Conceição-Neto N, Temperton B, Bolduc B, Alberti A, et al. Marine DNA viral macro- and microdiversity from Pole to Pole. Cell. 2019;177(5):1109–23. https://doi.org/10.1016/j.cell.2019.03.040.
Article
CAS
Google Scholar
Holmes EC. Reagent contamination in viromics: all that glitters is not gold. Clin Microbiol Infect. 2019;25(10):1167–8.
Article
CAS
Google Scholar
Holmes EC. The evolution and emergence of RNA viruses. New York: Oxford Univ Press; 2009.
Holmes EC. What does virus evolution tell us about virus origins? J Virol. 2011;85(11):5247–51.
Article
CAS
Google Scholar
Hosono S, Faruqi AF, Dean FB, Du Y, Sun Z, Wu X, et al. Unbiased whole-genome amplification directly from clinical samples. Genome Res. 2003;13(5):954–64.
Article
CAS
Google Scholar
Hurwitz BL, Hallam SJ, Sullivan MB. Metabolic reprogramming by viruses in the sunlit and dark ocean. Genome Biol. 2013;14(11):R123. https://doi.org/10.1186/gb-2013-14-11-r123.
Article
Google Scholar
Hurwitz BL, U’Ren JM. Viral metabolic reprogramming in marine ecosystems. Curr Opin Microbiol. 2016;31:161–8.
Article
CAS
Google Scholar
Huson DH, Beier S, Flade I, Górska A, El-Hadidi M, Mitra S, et al. MEGAN community edition - interactive exploration and analysis of large-scale microbiome sequencing data. PLoS Comput Biol. 2016;12(6):e1004957.
Article
Google Scholar
Jackson EW, Wilhelm RC, Johnson MR, Lutz HL, Danforth I, Gaydos JK, et al. Diversity of sea star-associated densoviruses and transcribed endogenous viral elements of densovirus origin. J Virol. 2020;95(1):e01594–20.
Jager MC, Tomlinson JE, Lopez-Astacio RA, Parrish CR, Van de Walle GR. Small but mighty: old and new parvoviruses of veterinary significance. Virol J. 2021;18(1):210.
Article
Google Scholar
Jiang JZ, Zhang W, Guo ZX, Cai CC, Su YL, Wang RX, et al. Functional annotation of an expressed sequence tag library from Haliotis diversicolor and analysis of its plant-like sequences. Mar Genomics. 2011;4(3):189–96.
Article
Google Scholar
Jiang T, Guo C, Wang M, Wang M, Zhang X, Liu Y, et al. Genome analysis of two novel Synechococcus phages that lack common auxiliary metabolic genes: possible reasons and ecological insights by comparative analysis of cyanomyoviruses. Viruses. 2020;12(8):800. https://doi.org/10.3390/v12080800.
Article
CAS
Google Scholar
Kang YJ, Huang W, Zhao AL, Lai DD, Shao L, Shen YQ, et al. Densoviruses in oyster Crassostrea ariakensis. Arch Virol. 2017;162(7):2153–7.
Article
CAS
Google Scholar
Kauffman KM, Hussain FA, Yang J, Arevalo P, Brown JM, Chang WK, et al. A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria. Nature. 2018;554(7690):118–22. https://doi.org/10.1038/nature25474.
Article
CAS
Google Scholar
Kieft K, Zhou Z, Anantharaman K. VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences. Microbiome. 2020;8(1):90. https://doi.org/10.1186/s40168-020-00867-0.
Article
CAS
Google Scholar
Krotman Y, Yergaliyev TM, Alexander Shani R, Avrahami Y, Szitenberg A. Dissecting the factors shaping fish skin microbiomes in a heterogeneous inland water system. Microbiome. 2020;8(1):9.
Article
CAS
Google Scholar
Landrau-Giovannetti N, Subramaniam K, Brown MA, Ng TFF, Rotstein DS, West K, et al. Genomic characterization of a novel circovirus from a stranded Longman’s beaked whale (Indopacetus pacificus). Virus Res. 2020;277:197826.
Article
CAS
Google Scholar
Levin RA, Voolstra CR, Weynberg KD, van Oppen MJ. Evidence for a role of viruses in the thermal sensitivity of coral photosymbionts. ISME J. 2017;11(3):808–12. https://doi.org/10.1038/ismej.2016.154.
Article
CAS
Google Scholar
Li Y, Fu X, Ma J, Zhang J, Hu Y, Dong W, et al. Altered respiratory virome and serum cytokine profile associated with recurrent respiratory tract infections in children. Nat Commun. 2019;10(1):2288.
Article
Google Scholar
Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006;22(13):1658–9.
Article
CAS
Google Scholar
Li D, Liu CM, Luo R, Sadakane K, Lam TW. MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinformatics. 2015;31(10):1674–76.
Liu F, Li Y, Yu H, Zhang L, Hu J, Bao Z, et al. MolluscDB: an integrated functional and evolutionary genomics database for the hyper-diverse animal phylum Mollusca. Nucleic Acids Res. 2021;49(D1):D988–97.
Article
CAS
Google Scholar
Liu P, Chen W, Chen JP. Viral metagenomics revealed Sendai virus and Coronavirus infection of Malayan pangolins (Manis javanica). Viruses. 2019;11(11):979.
Article
CAS
Google Scholar
Lokmer A, Goedknegt MA, Thieltges DW, Fiorentino D, Kuenzel S, Baines JF, et al. Spatial and temporal dynamics of Pacific oyster hemolymph microbiota across multiple scales. Front Microbiol. 2016;7:1367.
Article
Google Scholar
Lokmer A, Kuenzel S, Baines JF, Wegner KM. The role of tissue-specific microbiota in initial establishment success of Pacific oysters. Environ Microbiol. 2016;18(3):970–87.
Article
CAS
Google Scholar
Lokmer A, Wegner KM. Hemolymph microbiome of Pacific oysters in response to temperature, temperature stress and infection. ISME J. 2015;9(3):670–82.
Article
CAS
Google Scholar
Lőrincz M, Cságola A, Farkas SL, Székely C, Tuboly T. First detection and analysis of a fish circovirus. J Gen Virol. 2011;192:1817–21.
Article
Google Scholar
Lőrincz M, Dán Á, Láng M, Csaba G, Tóth AG, Székely C, et al. Novel circovirus in European catfish (Silurus glanis)[J]. Arch Virol. 2012;157(6):1173–6.
Article
Google Scholar
Nayfach S, Camargo AP, Schulz F, Eloe-Fadrosh E, Roux S, Kyrpides NC. CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nat Biotechnol. 2021;39(5):578–85.
Article
CAS
Google Scholar
Nayfach S, Páez-Espino D, Call L, Low SJ, Sberro H, Ivanova NN, et al. Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol. 2021;6(7):960–70. https://doi.org/10.1038/s41564-021-00928-6.
Article
CAS
Google Scholar
Newell DG, Koopmans M, Verhoef L, Duizer E, Aidara-Kane A, Sprong H, et al. Food-borne diseases - the challenges of 20 years ago still persist while new ones continue to emerge. Int J Food Microbiol. 2010;139(Suppl 1):S3-15.
Article
Google Scholar
Neri U, Wolf YI, Roux S, Camargo AP, Lee B, Kazlauskas D, et al. RNA Virus Discovery Consortium, Krupovic M, Dolja VV, Kyrpides NC, Koonin EV, Gophna U. Expansion of the global RNA virome reveals diverse clades of bacteriophages. Cell. 2022 Oct 13;185(21):4023–37.e18.
Nguyen VK, King WL, Siboni N, Mahbub KR, Dove M, O’Connor W, et al. The Sydney rock oyster microbiota is influenced by location, season and genetics. Aquaculture. 2020;527:735472.
Article
CAS
Google Scholar
Oetama VSP, Hennersdorf P, Abdul-Aziz MA, Mrotzek G, Haryanti H, Saluz HP. Microbiome analysis and detection of pathogenic bacteria of Penaeus monodon from Jakarta Bay and Bali. Mar Pollut Bull. 2016;110(2):718–25.
Article
CAS
Google Scholar
Olalemi A, Baker-Austin C, Ebdon J, Taylor H. Bioaccumulation and persistence of faecal bacterial and viral indicators in Mytilus edulis and Crassostrea gigas. Int J Hyg Environ Health. 2016;219(7 Pt A):592–8.
Article
CAS
Google Scholar
Paez-Espino D, Eloe-Fadrosh EA, Pavlopoulos GA, Thomas AD, Huntemann M, Mikhailova N, et al. Uncovering Earth’s virome. Nature. 2016;536(7617):425–30. https://doi.org/10.1038/nature19094.
Article
CAS
Google Scholar
Pan X, Durrett RE, Zhu H, Tanaka Y, Li Y, Zi X, et al. Two methods for full-length RNA sequencing for low quantities of cells and single cells. Proc Natl Acad Sci U S A. 2013;110(2):594–9.
Article
CAS
Google Scholar
Parras-Moltó M, Rodríguez-Galet A, Suárez-Rodríguez P, López-Bueno A. Evaluation of bias induced by viral enrichment and random amplification protocols in metagenomic surveys of saliva DNA viruses. Microbiome. 2018;6(1):119.
Article
Google Scholar
Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C. Salmon provides fast and bias-aware quantification of transcript expression. Nat Methods. 2017;14(4):417–9.
Article
CAS
Google Scholar
Picher ÁJ, Budeus B, Wafzig O, Krüger C, García-Gómez S, Martínez-Jiménez MI, et al. TruePrime is a novel method for whole-genome amplification from single cells based on TthPrimPol. Nat Commun. 2016;7:13296.
Article
CAS
Google Scholar
Polson SW, Wilhelm SW, Wommack KE. Unraveling the viral tapestry (from inside the capsid out). ISME J. 2011;5(2):165–8.
Article
Google Scholar
Porter AF, Cobbin J, Li CX, Eden JS, Holmes EC. Metagenomic identification of viral sequences in laboratory reagents. Viruses. 2021;13(11):2122.
Article
CAS
Google Scholar
Powell D, Subramanian S, Suwansa-Ard S, Zhao M, O’Connor W, Raftos D, et al. The genome of the oyster Saccostrea offers insight into the environmental resilience of bivalves. DNA Res. 2018;25(6):655–65.
Article
CAS
Google Scholar
Renault T, Le Deuff RM, Chollet B, Cochennec N, Gérard A. Concomitant herpes-like virus infections in hatchery-reared larvae and nursery-cultured spat Crassostrea gigas and Ostrea edulis. Dis Aquat Organ. 2000;42(3):173–83.
Article
CAS
Google Scholar
Rosani U, Gerdol M. A bioinformatics approach reveals seven nearly-complete RNA-virus genomes in bivalve RNA-seq data. Virus Res. 2017;239:33–42.
Article
CAS
Google Scholar
Rosani U, Shapiro M, Venier P, Allam B. A needle in a haystack: tracing bivalve-associated viruses in high-throughput transcriptomic data. Viruses. 2019;11(3):205.
Article
CAS
Google Scholar
Rosani U, Venier P. Oyster RNA-seq data support the development of Malacoherpesviridae genomics. Front Microbiol. 2017;8:1515.
Article
Google Scholar
Rosario R, Fierer N, Miller S, Luongo J, Breitbart M. Diversity of DNA and RNA viruses in indoor air as assessed via metagenomic sequencing. Environ Sci Technol. 2018;52(3):1014–27.
Article
CAS
Google Scholar
Roux S, Páez-Espino D, Chen IA, Palaniappan K, Ratner A, Chu K, et al. IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses. Nucleic Acids Res. 2021;49(D1):D764–75. https://doi.org/10.1093/nar/gkaa946.
Article
CAS
Google Scholar
Roux S, Brum JR, Dutilh BE, et al. Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses. Nature. 2016;537(7622):689-93.
Sandri C, Correa F, Spiezio C, Trevisi P, Luise D, Modesto M, et al. Fecal microbiota characterization of seychelles giant tortoises (Aldabrachelys gigantea) living in both wild and controlled environments. Front Microbiol. 2020;11:569249.
Article
Google Scholar
Scanes E, Parker LM, Seymour JR, Siboni N, King WL, Danckert NP, et al. Climate change alters the haemolymph microbiome of oysters. Mar Pollut Bull. 2021;164:111991.
Article
CAS
Google Scholar
Shang J, Jiang J, Sun Y. Bacteriophage classification for assembled contigs using graph convolutional network. Bioinformatics. 2021;37(Suppl_1):i25–33.
Article
CAS
Google Scholar
Shi M, Lin XD, Chen X, Tian JH, Chen LJ, Li K, et al. The evolutionary history of vertebrate RNA viruses. Nature. 2018;556(7700):197–202. https://doi.org/10.1038/s41586-018-0012-7.
Article
CAS
Google Scholar
Shi M, Lin XD, Tian JH, Chen LJ, Chen X, Li CX, et al. Redefining the invertebrate RNA virosphere. Nature. 2016;540(7634):539–43. https://doi.org/10.1038/nature20167.
Article
CAS
Google Scholar
Smits SL, Zijlstra EE, van Hellemond JJ, Schapendonk CM, Bodewes R, Schürch AC, et al. Novel cyclovirus in human cerebrospinal fluid, Malawi, 2010–2011. Emerg Infect Dis. 2013;19(9):1511–3.
Article
Google Scholar
Stepanauskas R, Fergusson EA, Brown J, Poulton NJ, Tupper B, Labonté JM, et al. Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles. Nat Commun. 2017;8(1):84.
Article
Google Scholar
Stevick RJ, Post AF, Gómez-Chiarri M. Functional plasticity in oyster gut microbiomes along a eutrophication gradient in an urbanized estuary. Animal microbiome. 2021;3(1):1–17.
Article
Google Scholar
Steward GF, Culley AI, Mueller JA, Wood-Charlson EM, Belcaid M, Poisson G. Are we missing half of the viruses in the ocean? ISME J. 2013;7(3):672–9. https://doi.org/10.1038/ismej.2012.121.
Article
CAS
Google Scholar
Su S, Munganga BP, Du F, Yu J, Li J, Yu F, et al. Relationship between the fatty acid profiles and gut bacterial communities of the Chinese mitten crab (Eriocheir sinensis) from ecologically different habitats. Front Microbiol. 2020;11:565267.
Article
Google Scholar
Suttle CA. Viruses in the sea. Nature. 2005;437(7057):356–61.
Article
CAS
Google Scholar
Suttle CA. Marine viruses - major players in the global ecosystem. Nat Rev Microbiol. 2007;5:801–12.
Tischer I, Gelderblom H, Vetterman W. Koch MAn A very small porcine virus with circular single-stranded DNA. Nature. 1982;295:64–6.
Article
CAS
Google Scholar
Tithi SS, Aylward FO, Jensen RV, Zhang L. FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data. PeerJ. 2018;6:e4227.
Article
Google Scholar
Todd D, Scott ANJ, Fringuelli E, Shivraprasad HL, Gavier-Widen D, Smyth JA. Molecular characterization of novel circoviruses from finch and gull. Avian Pathol. 2007;36(1):75–81.
Article
CAS
Google Scholar
Van Brussel K, Holmes EC. Zoonotic disease and virome diversity in bats. Curr Opin Virol. 2021;23(52):192–202.
Google Scholar
Varsani A, Krupovic M. Sequence-based taxonomic framework for the classification of uncultured single-stranded DNA viruses of the family Genomoviridae. Virus Evol. 2017;3(1):vew037.
Article
Google Scholar
Wang J, Li Y, He X, Ma J, Hong W, Hu F, et al. Gemykibivirus genome in lower respiratory tract of elderly woman with unexplained acute respiratory distress syndrome. Clin Infect Dis. 2019;69(5):861–4.
Article
CAS
Google Scholar
Wegner KM, Volkenborn N, Peter H, Eiler A. Disturbance induced decoupling between host genetics and composition of the associated microbiome. BMC Microbiol. 2013;13(1):1–12.
Article
Google Scholar
Wei HY, Huang S, Wang JY, Gao F, Jiang JZ. Comparison of methods for library construction and short read annotation of shellfish viral metagenomes. Genes Genom. 2018;40(3):281–8.
Article
CAS
Google Scholar
Wei HY, Huang S, Yao T, Gao F, Jiang JZ, Wang JY. Detection of viruses in abalone tissue using metagenomics technology. Aquac Res. 2018;49(8):2704–13.
Article
CAS
Google Scholar
Woods LW, Latimer KS, Barr BC, Niagro FD, Campagnoli RP, Nordhausen RW, et al. Circovirus-like infection in a pigeon. J Vet Diagn Invest. 1993;5(4):609–12.
Article
CAS
Google Scholar
Wolf YI, Silas S, Wang Y, Wu S, Bocek M, Kazlauskas D, et al. Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome. Nat Microbiol. 2020 Oct;5(10):1262–70.
Wommack KE, Colwell RR. Virioplankton: viruses in aquatic ecosystems. Microbiol Mol Biol Rev. 2000;64:69−114.
Zayed AA, Wainaina JM, Dominguez-Huerta G, Pelletier E, Guo JR, et al. Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome. Science. 2022;376(6589):156–62.
Article
CAS
Google Scholar
Zhang G, Fang X, Guo X, Li L, Luo R, Xu F, et al. The oyster genome reveals stress adaptation and complexity of shell formation. Nature. 2012;490(7418):49–54. https://doi.org/10.1038/nature11413.
Article
CAS
Google Scholar
Zhang YY, Chen Y, Wei X, Cui J. Viromes in marine ecosystems reveal remarkable invertebrate RNA virus diversity. Sci China Life Sci. 2021;65(2):426–37. https://doi.org/10.1007/s11427-020-1936-2.
Article
Google Scholar
Zhao L, Rosario K, Breitbart M, Dufy S. Eukaryotic circular rep-encoding single-stranded DNA (CRESS DNA) viruses: ubiquitous viruses with small genomes and a diverse host range. Adv Virus Res. 2019;103:71–133.
Article
CAS
Google Scholar
Zuo T, Liu Q, Zhang F, Yeoh YK, Wan Y, Zhan H, et al. Temporal landscape of human gut RNA and DNA virome in SARS-CoV-2 infection and severity. Microbiome. 2021;9(1):91.
Article
CAS
Google Scholar