Table 2 Fungal nitrogen-related DE genes from upregulated Basidiomycota. EBSeq [42, 43] was used to estimate posterior probability of differential expression (PPDE) ≥ 0.95. A full DE transcript list including expression data, functional description (if available), gene ontology terms (if available) and secondary annotation (if available) is provided in Additional file 6
Query id | Cont mean tpm | Treat mean tpm | FC | 1° annotation id | Subject description |
|---|---|---|---|---|---|
c596378_g2_i3 | 0.14 | 66.39 | 477.06 | gi|749759516|gb|KII84515.1| | Ammonium transporter |
c596378_g2_i2 | 0.14 | 64.18 | 458.91 | tr|Q8NKD5|Q8NKD5_HEBCY | Ammonium transporter |
c599446_g2_i1 | 0.14 | 57.28 | 405.50 | gi|660970957|gb|KEP54657.1| | Rab GTPase family protein |
c555426_g1_i1 | 0.04 | 47.83 | 1162.00 | gi|646294952|gb|KDQ16118.1| | Small GTPase-binding protein |
c590384_g1_i3 | 0.36 | 47.03 | 130.17 | tr|R7RZR8|R7RZR8_PUNST | fun34-transmembrane protein of ammonia production |
c597663_g1_i3 | 0.02 | 31.86 | 1277.49 | tr|R7S8J0|R7S8J0_TRAVS | Small GTPase-binding protein |
c576075_g1_i1 | 0.02 | 22.26 | 1356.92 | gi|691790442|emb|CDO74199.1| | Amino acid transporter |
c597663_g1_i1 | 0.01 | 20.67 | 2581.27 | tr|V2X8E2|V2X8E2_MONRO | Small GTPase-binding protein |
c596122_g2_i1 | 0.00 | 18.08 | 4389.38 | tr|V2WTU3|V2WTU3_MONRO | Plasma membrane h(+)-atpase 1 |
c592122_g2_i1 | 0.00 | 18.00 | inf | tr|S7PWC9|S7PWC9_GLOTA | Mitochondrial carrier |
c598258_g3_i1 | 0.00 | 16.68 | inf | gi|597977025|ref.|XP_007362384.1| | Urease |
c597755_g1_i1 | 0.00 | 16.37 | inf | gi|754376368|gb|KIP08998.1| | Subtilisin-like serine protease pepC |
c601027_g2_i1 | 0.00 | 15.18 | inf | gi|660966237|gb|KEP50782.1| | Serine carboxypeptidase |
c590409_g1_i1 | 0.00 | 13.93 | inf | tr|E2LF88|E2LF88_MONPE | Oligopeptide transporter |
c602018_g3_i1 | 0.01 | 12.29 | 949.61 | tr|R7S2N4|R7S2N4_PUNST | Endopeptidase |
c601958_g7_i1 | 0.00 | 11.68 | inf | tr|M2R776|M2R776_CERS8 | Aminopeptidase 2 |
c597846_g2_i1 | 0.01 | 11.17 | 1682.64 | gi|695572973|ref|XP_009551472.1| | Purine transporter |
c598346_g1_i1 | 0.00 | 10.15 | inf | gi|807753175|ref.|XP_012181382.1| | ATP-dependent metallopeptidase Hfl |
c596122_g2_i3 | 0.05 | 9.94 | 216.32 | laccaria|A0A0C9XV60_9AGAR | Plasma membrane ATPase |
c600930_g1_i1 | 0.00 | 9.88 | inf | tr|V2X687|V2X687_MONRO | Glutamate synthase |
c575280_g1_i3 | 0.00 | 9.72 | inf | tr|F8NRP9|F8NRP9_SERL9 | Oligopeptide transporter |
c586208_g2_i4 | 0.00 | 9.42 | inf | gi|595766652|ref|XP_007261869.1| | Small GTPase |
c599446_g3_i1 | 0.00 | 8.68 | inf | tr|B0CRR7|B0CRR7_LACBS | Ras-related protein Rab-5B |
c597351_g5_i3 | 0.05 | 8.59 | 185.55 | tr|D8PW94|D8PW94_SCHCM | Carbon-nitrogen hydrolase |
c600850_g1_i2 | 0.00 | 8.38 | inf | gi|751184086|gb|KIL70023.1| | Aspartic peptidase A1 |
c591514_g1_i1 | 0.00 | 8.25 | inf | gi|597967903|ref.|XP_007360041.1| | Ras protein |
c600898_g1_i3 | 0.02 | 7.43 | 316.59 | tr|M2RCY8|M2RCY8_CERS8 | Zinc carboxypeptidase |
c590849_g1_i2 | 0.00 | 7.23 | inf | gi|751185175|gb|KIL71111.1| | Rab-type small GTP-binding protein |
c594481_g1_i1 | 0.00 | 7.10 | inf | uniparc|UPI000444A56C | Amino acid transporter |
c595033_g1_i1 | 0.00 | 7.06 | inf | tr|V2WPM3|V2WPM3_MONRO | Ras GTPase-activating protein |
c596094_g1_i2 | 0.00 | 6.76 | inf | gi|695535578|ref|XP_009541732.1| | Metallo peptidase M16B |
c601513_g2_i5 | 0.00 | 6.72 | inf | tr|M2PP80|M2PP80_CERS8 | Glutamine synthetase |
c587799_g1_i1 | 0.00 | 5.74 | inf | laccaria|B0CVJ7|B0CVJ7_LACBS | Aspartic peptidase A1 |
c583462_g2_i3 | 0.00 | 5.67 | inf | tr|A8N171|A8N171_COPC7 | Glutathione transporter |
c570564_g1_i1 | 0.00 | 5.19 | inf | gi|827762056|gb|KLO16666.1| | Zn-dependent exopeptidase |
c594381_g2_i2 | 0.00 | 5.13 | inf | gi|599097713|ref.|XP_007380030.1| | Zn-dependent exopeptidase |
c600158_g1_i5 | 0.03 | 5.12 | 203.31 | tr|F8NFV4|F8NFV4_SERL9 | rab GDP-dissociation inhibitor |
c583177_g1_i2 | 0.00 | 4.84 | inf | gi|751693001|gb|KIM42985.1| | Transmembrane GTPase fzo1 |
c600177_g1_i1 | 0.00 | 4.71 | inf | gi|914260206|gb|KNZ75358.1| | Peptide/nitrate transporter |
c601958_g3_i1 | 0.00 | 4.68 | inf | tr|M2R776|M2R776_CERS8 | Aminopeptidase 2 |
c594481_g1_i2 | 0.00 | 4.50 | inf | gi|618814194|ref.|XP_007309736.1| | Amino acid transporter |
c567674_g1_i1 | 0.00 | 4.48 | inf | gi|599098740|ref.|XP_007380368.1| | Carbon-nitrogen hydrolase |
c597783_g1_i3 | 0.00 | 4.45 | inf | tr|F8QHR7|F8QHR7_SERL3 | Glutamate carboxypeptidase |
c594170_g1_i2 | 0.00 | 3.78 | inf | gi|751737188|gb|KIM85475.1| | Mitochondrial carrier |
c601872_g2_i1 | 0.00 | 3.76 | inf | gi|628824529|ref|XP_007762568.1| | ATP-dependent metallopeptidase Hfl |
c599577_g1_i2 | 0.00 | 3.73 | inf | gi|597902114|ref.|XP_007298356.1| | Peptidase M24A methionine aminopeptidase |
c602154_g2_i2 | 0.01 | 3.51 | 328.31 | gi|761927343|gb|KIY48481.1| | D-aspartate oxidase |
c600522_g1_i1 | 0.00 | 3.41 | inf | gi|695555686|ref.|XP_009546958.1| | Bleomycin hydrolases/aminopeptidases (cys family) |
c598679_g1_i2 | 0.00 | 3.40 | 852.70 | tr|M2QPL6|M2QPL6_CERS8 | Aspartic-type endopeptidase |
c601070_g1_i3 | 0.00 | 3.26 | inf | gi|599098141|ref|XP_007380172.1| | Amine oxidase |
c595365_g1_i2 | 0.00 | 2.95 | inf | tr|E2LXQ1|E2LXQ1_MONPE | Amino acid transporter |
c601230_g1_i3 | 0.01 | 2.92 | 561.26 | gi|695571495|ref|XP_009551148.1| | Metallo peptidase M24B |
c600602_g1_i1 | 0.00 | 2.84 | inf | gi|695544112|ref.|XP_009543978.1| | Small monomeric GTPase |
c601825_g4_i5 | 0.00 | 2.32 | inf | gi|754370636|gb|KIP03412.1| | Vacuolar amino acid transporter |