Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity
Received: 22 July 2015
Accepted: 22 July 2015
Published: 31 July 2015
The original article was published in Microbiome 2015 3:20
Correction
After publication of this work [1], we noted that one of the references in the introduction was not described properly. With respect to the original authors, we clarify that this sentence in introduction: “Due to the lack of a gold standard of ‘correct’ OTUs, several measurements have been used to evaluate the performance of clustering methods, for example, rationality of OTU structure [2, 3], computational efficiency (that is, runtime and memory requirements) [4], and the ability to cope with OTU inflation [5]” should be stated as “Due to the lack of a gold standard of ‘correct’ OTUs, several measurements have been used to evaluate the performance of clustering methods, for example, rationality of OTU structure [2], use of the Matthew’s Correlation Coefficient [3], computational efficiency (that is, runtime and memory requirements) [4], and the ability to cope with OTU inflation [5]”.
Notes
Declarations
Authors’ Affiliations
References
- He Y, Caporaso JG, Jiang XT, Sheng HF, Huse SM, Rideout JR, et al. Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity. Microbiome. 2015;3:20.PubMed CentralPubMedView ArticleGoogle Scholar
- Jiang X-T, Zhang H, Sheng H-F, Wang Y, He Y, Zou F, et al. Two-Stage Clustering (TSC): a pipeline for selecting operational taxonomic units for the high-throughput sequencing of PCR amplicons. PLoS ONE. 2012;7.Google Scholar
- Schloss PD, Westcott SL. Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol. 2011;77:3219–26.PubMed CentralPubMedView ArticleGoogle Scholar
- Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26:2460–1.PubMedView ArticleGoogle Scholar
- Edgar RC. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods. 2013;10:996–8.PubMedView ArticleGoogle Scholar
Copyright
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
