Fig. 5
From: Metagenomic characterization of a novel non-ammonia-oxidizing Thaumarchaeota from hadal sediment
Illustration of comparative pan-genomic analysis results between groups of non-ammonia-oxidizing archaea (non-AOA) and AOA. MT1_thaum1 and MT7_thaum2 are metagenome-assembled genomes (MAGs) binned from Mariana Trench sediment samples. SRR12157856_bin_58, SRR10168429_blastn_bin_1, SRR14708957_bin_13, and SRR14708362_bin_10 are reassembled from public Sequence Read Archive (SRA) datasets. All Group-3.unk binned from this study are non-AOA, whereas MT7_thaum2 is an AOA group. Genes involved in thiamine biosynthesis, biotin biosynthesis, cobalamin biosynthesis, pyruvate oxidation, lipoic acid biosynthesis, and aromatic degradation are shown. PdhAD, pyruvate dehydrogenase E1 component subunit alpha/dihydrolipoyl dehydrogenase; AceE, pyruvate dehydrogenase E2 component; PorABCD, pyruvate ferredoxin oxidoreductase alpha/beta/gamma/delta; OforAB, 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha/beta; LipAB, lipoyl synthase AB; CatE, catechol 2,3-dioxygenase; UbiX, flavin prenyltransferase; Pht5, 4,5-dihydroxyphthalate decarboxylase; EcfT energy-coupling factor transport system permease protein; CoxL, aerobic carbon monoxide dehydrogenase large subunit; IPCT/DIPPS, inositol-1-phosphate cytidylyltransferase/di-myo-inositol-1,3′-phosphate-1′-phosphate synthase