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Fig. 2 | Microbiome

Fig. 2

From: Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe

Fig. 2

Alpha diversity across cohorts stratified by time and location. Shannon entropy differences between cohorts at baseline. p-values were calculated using a Kruskal–Wallis test with a Dunn’s post hoc (pairwise comparisons shown). B Same as A stratified by location. C Shannon entropy between timepoints for each cohort stratified by location. p-values were calculated using a paired Mann–Whitney U test. D Linear regression of the difference in Shannon entropy (Shannon entropy at week 24 minus week 0) by baseline Shannon entropy (Shannon entropy at week 0). p-values are coded as “****” between (0, 0.0001), “***” (0.0001, 0.001), “**” (0.001, 0.01), “*” (0.01, 0.05), with square brackets indicating that the endpoints are included in the interval

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