MgCST | Most frequently detected mgSs | Most abundant mgSs | Number of samples | Number of women | Cluster stability (100 bootstraps) | Median Shannon Index | Number of samples from metagenomic data source | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
UMB-HMP | Li et al. | LSVF | HMP | VIRGO | VMRC | |||||||
1 | Lactobacillus crispatus 1 | Lactobacillus crispatus 1 | 143 | 79 | 0.977 | 0.17 | 20 | 2 | 21 | 63 | 15 | 22 |
2 | Lactobacillus crispatus 2 | Lactobacillus crispatus 2 | 39 | 26 | 0.965 | 0.47 | 39 | 0 | 0 | 0 | 0 | 0 |
3 | Lactobacillus crispatus 3 | Lactobacillus crispatus 3 | 83 | 51 | 0.912 | 0.28 | 9 | 2 | 15 | 14 | 22 | 21 |
4 | Lactobacillus crispatus 4 | Lactobacillus crispatus 4 | 27 | 12 | 0.972 | 0.39 | 1 | 1 | 0 | 0 | 3 | 22 |
5 | Lactobacillus crispatus 5 | Lactobacillus crispatus 5 | 37 | 27 | 0.960 | 0.11 | 1 | 0 | 19 | 16 | 1 | 0 |
6 | Lactobacillus crispatus 6 | Lactobacillus crispatus 6 | 28 | 13 | 0.982 | 0.69 | 12 | 0 | 5 | 2 | 9 | 0 |
7 | Lactobacillus gasseri 1 | Lactobacillus gasseri 1 | 16 | 8 | 0.786 | 0.5 | 0 | 0 | 1 | 8 | 1 | 6 |
8 | Lactobacillus gasseri 2 | Lactobacillus gasseri 2 | 29 | 17 | 0.945 | 0.73 | 15 | 0 | 8 | 0 | 1 | 5 |
9 | Lactobacillus gasseri 3 | Lactobacillus gasseri 3 | 14 | 5 | 0.425 | 0.89 | 6 | 0 | 0 | 2 | 0 | 6 |
10 | Lactobacillus iners 1 | Lactobacillus iners 1 | 113 | 76 | 0.912 | 0.7 | 24 | 0 | 40 | 2 | 10 | 37 |
11 | Lactobacillus iners 2 | Lactobacillus iners 2 | 95 | 79 | 0.862 | 0.53 | 11 | 7 | 47 | 0 | 28 | 2 |
12 | Lactobacillus iners 3 | Lactobacillus iners 3 | 131 | 92 | 0.927 | 0.44 | 9 | 10 | 45 | 19 | 42 | 6 |
13 | Lactobacillus iners 5 | Lactobacillus iners 5 | 45 | 41 | 0.912 | 0.57 | 1 | 0 | 29 | 1 | 13 | 1 |
14 | Lactobacillus iners 6 | Lactobacillus iners 6 | 34 | 25 | 0.945 | 0.8 | 34 | 0 | 0 | 0 | 0 | 0 |
15 | Lactobacillus jensenii 1 | Lactobacillus jensenii 1 | 44 | 28 | 0.888 | 0.77 | 8 | 1 | 3 | 10 | 18 | 4 |
16 | Lactobacillus jensenii 2 | Lactobacillus jensenii 2 | 67 | 39 | 0.859 | 0.71 | 8 | 0 | 15 | 15 | 13 | 16 |
17 | "Ca. Lachnocurva vaginae" 1 | "Ca. Lachnocurva vaginae" 1 | 58 | 57 | 0.552 | 1.48 | 3 | 0 | 51 | 1 | 3 | 0 |
18 | "Ca. Lachnocurva vaginae" 2 | "Ca. Lachnocurva vaginae" 2 | 28 | 27 | 0.574 | 1.57 | 0 | 0 | 27 | 0 | 1 | 0 |
19 | "Ca. Lachnocurva vaginae" 3 | "Ca. Lachnocurva vaginae" 3 | 43 | 36 | 0.574 | 1.91 | 7 | 0 | 27 | 0 | 9 | 0 |
20 | Gardnerella vaginalis 1 | Gardnerella vaginalis 1 | 250 | 171 | 0.799 | 1.62 | 90 | 2 | 98 | 2 | 38 | 20 |
21 | Gardnerella vaginalis 1 | Gardnerella vaginalis 1 | 37 | 21 | 0.542 | 1.97 | 37 | 0 | 0 | 0 | 0 | 0 |
22 | Gardnerella vaginalis 2 | Prevotella amnii 4 | 202 | 159 | 0.607 | 1.79 | 30 | 0 | 91 | 3 | 67 | 11 |
23 | Gardnerella vaginalis 3 | Gardnerella vaginalis 3 | 53 | 42 | 0.862 | 0.88 | 18 | 5 | 15 | 2 | 5 | 8 |
24 | Gardnerella vaginalis 4 | Gardnerella vaginalis 4 | 145 | 106 | 0.959 | 1.21 | 44 | 0 | 64 | 6 | 24 | 7 |
25 | Gardnerella vaginalis 5 | Gardnerella vaginalis 5 | 34 | 17 | 0.983 | 0.83 | 11 | 1 | 9 | 6 | 2 | 5 |
26 | Bifidobacterium breve | Bifidobacterium breve | 16 | 11 | 0.750 | 0.9 | 5 | 0 | 1 | 0 | 8 | 2 |
27 | Bifidobacterium dentium | Enterococcus faecalis 3 | 87 | 76 | 0.750 | 1.78 | 23 | 13 | 22 | 2 | 9 | 18 |