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Table 2 Annotation of the GWAS results on SCFAs

From: Combined effect of microbially derived cecal SCFA and host genetics on feed efficiency in broiler chickens

Traits

SNP-h2

Chr

Position

Top SNP

Gene

Pathway

Propionate

0.183

4

29,414,391

-

29,417,189

Chr4:29,417,189:G > A

MAML3

Notch signaling pathway

MGST2 (50 k upstream)

Glutathione metabolism

Metabolism of xenobiotics

Drug metabolism Metabolic pathways

SETD7 (70 k upstream)

Lysine degradation

Metabolic pathways

FoxO signaling pathway

Butyrate

0.242

2

-

Chr2:11,072,248:C > T

NA

 

7

-

Chr7:1,661,848:G > A

lnc_RNA

 

Valerate

0.389

6

28,682,597

-

28,802,237

Chr6:28,682,597:T > C

TDRD1

 

6

Chr6:28,792,315:G > A

ABLIM1

 

6

Chr6:28,721,051:A > G

AFAP1L2

 

Isovalerate

0.401

6

28,682,597

-

28,802,237

Chr6:28,682,597:T > A

TDRD1

 

6

Chr6:28,721,051:A > G

AFAP1L2

 
  1. The column “SNP-h2” is the SNP-based heritability, the column “Chr” is the Gallus gallus chromosome, the column “Position” is the region of SNPs above the suggestive line, the column “Top SNP” is highest the P value SNPs in each gene