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Fig. 2 | Microbiome

Fig. 2

From: Genomic exploration of coral-associated bacteria: identifying probiotic candidates to increase coral bleaching resilience in Galaxea fascicularis

Fig. 2

Phylogenetic tree of the 82 pure-cultured G. fascicularis-associated bacteria. The 82 isolates were assigned to 16 bacterial families. The 16S rRNA genes were assembled (pink stars) for all but five genomes. Taxonomic assignment of the bacterial genomes was conducted using the Genome Taxonomy Database (GTDB) [61] via GTDB-Tk v2.1.0 [62] based on 120 bacterial marker genes. The phylogenetic tree was constructed using the maximum likelihood method in IQ tree v1.6.1 [63] with a LG + F + R7 model selected as the best model by ModelFinder Plus, and using 1000 ultrafast bootstraps from multiple sequence alignments of the 120 bacterial marker genes. The tree was visualised in iTOL v6 [64]. DMG = Doherty Microbial Genomics

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Microbiome

ISSN: 2049-2618

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