Table 2 The summary statistics of the reference genomes for 6 tested bacteria. “Average Jaccard similarity” is obtained by calculating the average of k-mers Jaccard similarity of all strains using Dashing [40]
From: High-resolution strain-level microbiome composition analysis from short reads
Species | Average genome size | Average Jaccard similarity | # of input genomes | # of representative strains (StrainEst) | # of representative strains (StrainGE) |
|---|---|---|---|---|---|
A. muciniphila | 2.7 Mb | 41.61% | 157 | 42 | 48 |
C. acnes | 2.5 Mb | 63.69% | 275 | 25 | 18 |
P. copri | 3.5 Mb | 30.94% | 112 | 42 | 43 |
E. coli | 4.9 Mb | 40.62% | 1433 | 333 | 662 |
M. tuberculosis | 4.3 Mb | 94.14% | 792 | 63 | 10 |
S. epidermidis | 2.5 Mb | 58.20% | 995 | 52 | 221 |