Fig. 11
From: High-resolution strain-level microbiome composition analysis from short reads
A StrainScan reveals the greater diversity of C. acnes in 9 real metagenomic samples. These samples were taken from three different sites of the skin (AI, Lc, and Vf) of two healthy individuals (HV05 and HV06), at different time points. The site codes are described in the original work [15]. B Phylogenetic tree of the identified strains. Leaves are colored using the same schema as in (A) and the distance is the Mash distance [14]. The tree is visualized by iTOL [65]. C The presence of unique gene clusters of “GCF_000194905” and “GCF_000252385”. “GCF_000194905” and “GCF_000252385” are highly similar and are in the same cluster of StrainGE and StrainEst. The presence is given by the original study [15] and each column refers to one unique gene cluster