Table 2 Species with genomic data well represented in the metatranscriptomes
From: Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory
Species | Supergroup | Group | Source | Trophic mode | BUSCO (%) | Incubations present | Max reads recovered per sample (%) |
|---|---|---|---|---|---|---|---|
Bathycoccus prasinos | Archaeplastida | Mamiellophyceae | genome | Phototroph | 75.3 | 2 | 2.74 |
Micromonas-sp1* | Archaeplastida | Mamiellophyceae | single-cell genome | Phototroph | 27.1 | 2 | 0.69 |
Ostreococcus lucimarinus | Archaeplastida | Mamiellophyceae | genome | Phototroph | 78.1 | 1 | 0.62 |
Picozoa sp. COSAG01 | Archaeplastida | Picozoa | single-cell genome | Heterotroph | 21.6 | 1 | 0.02 |
Picozoa sp. COSAG02 | Archaeplastida | Picozoa | single-cell genome | Heterotroph | 32.1 | 1 | 0.03 |
Pycnococcus provasolii | Archaeplastida | Pycnococcaceae | transcriptome | Phototroph | 55.3 | 1 | 0.01 |
Chrysochromulina rotalis | Haptista | Prymnesiophyceae | transcriptome | Mixotroph | 53.7 | 1 | 0.11 |
Dicrateria rotunda | Haptista | Prymnesiophyceae | transcriptome | Mixotroph | 36.1 | 1 | 0.28 |
Emiliania huxleyi | Haptista | Prymnesiophyceae | genome | Mixotroph | 56.1 | 3 | 0.10 |
Isochrysidales sp. CCMP1244 | Haptista | Prymnesiophyceae | transcriptome | Mixotroph | 57.2 | 3 | 0.07 |
Phaeocystis cordata | Haptista | Prymnesiophyceae | transcriptome | Mixotroph | 53.4 | 3 | 1.00 |
Acanthoecidae sp. 10tr | Opisthokonta | Choanoflagellata | transcriptome | Heterotroph | 78.8 | 3 | 0.51 |
Mataza sp. D1 | Rhizaria | Cercozoa | transcriptome | Heterotroph | 77.7 | 2 | 0.10 |
Cafeteria burkhardae | Stramenopiles | Bicosoecida | genome | Heterotroph | 67.1 | 1 | 0.10 |
Triparma eleuthera | Stramenopiles | Bolidophyceae | transcriptome | Mixotroph | 53 | 3 | 0.19 |
Triparma laevis | Stramenopiles | Bolidophyceae | transcriptome | Mixotroph | 40.8 | 2 | 0.23 |
ChrysophyceaeNA-sp1* | Stramenopiles | Chrysophyceae | single-cell genome | Heterotroph | 21.2 | 1 | 0.13 |
Leptocylindrus hargravesii | Stramenopiles | Diatomeae | transcriptome | Phototroph | 65.1 | 1 | 0.05 |
Rhizochromulina sp. CCMP1243 | Stramenopiles | Dictyochophyceae | transcriptome | Mixotroph | 67.9 | 2 | 1.90 |
MAST-1C-sp1* | Stramenopiles | MAST-1 | single-cell genome | Heterotroph | 3.9 | 2 | 0.08 |
MAST-1D-sp2* | Stramenopiles | MAST-1 | single-cell genome | Heterotroph | 11.4 | 1 | 0.02 |
MAST-3C-sp2* | Stramenopiles | MAST-3 | single-cell genome | Heterotroph | 31.4 | 1 | 0.04 |
MAST-4A-sp1 | Stramenopiles | MAST-4 | single-cell genome | Heterotroph | 73.8 | 4 | 0.28 |
MAST-4E-sp1 | Stramenopiles | MAST-4 | single-cell genome | Heterotroph | 57.3 | 2 | 1.56 |
MAST-8B-sp1* | Stramenopiles | MAST-8 | single-cell genome | Heterotroph | 18.4 | 2 | 0.05 |