Table 2 Average runtime performance of MetaPro, HUMAnN3, and SAMSA2
Dataset | Pipeline | Pre-processing | St. dev | Data analysis | St. dev | Total time | St. dev |
|---|---|---|---|---|---|---|---|
NOD mouse | HUMAnN3 | 339.50 | 101.00 | 970.92 | 211.83 | 1310.42 | 267.13 |
NOD mouse | SAMSA2 | –- | –- | –- | –- | 2341.75 | 320.92 |
NOD mouse | MetaPro | 3869.12 | 3442.85 | 12,202.28 | 4696.80 | 16,071.40 | 5259.01 |
Kimchi | HUMAnN3 | 1960.80 | 133.92 | 9106.20 | 809.62 | 11,067.00 | 902.83 |
Kimchi | SAMSA2 | –- | –- | –- | –- | 5882.60 | 1738.68 |
Kimchi | MetaPro | 24,853.02 | 3256.61 | 101,984.66 | 67,339.49 | 12,6837.68 | 70,477.12 |
Oral Biofilm | HUMAnN3 | 3481.00 | 203.84 | 10,800.63 | 967.63 | 14,281.63 | 1126.46 |
Oral Biofilm | SAMSA2 | –- | –- | –- | –- | 53,938.88 | 3190.63 |
Oral Biofilm | MetaPro | 19,183.11 | 2479.90 | 41,996.21 | 3424.56 | 61,179.33 | 5191.15 |