Table 5 Differential characteristics of biofilm and quorum sensing-related genes in ISS Enterobacter bungandensis (n = 4) and F1-2P MAG (n = 1) when compared to other related strains
From: Characterization of metagenome-assembled genomes from the International Space Station
Gene name | Types of residue | Size (bp) | Number of variable residues in genes responsible for biofilm formation and quorum sensing in ISS Enterobacter bugandensis strains and MAG when compared to other related strains (GenBank accession no) that are as follows: | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EB-247 1 NZ_JZZB01000066.1 | GN035669 | GN02548 NZ_LEDQ01000032.1 | GN02283 NZ_LEEJ01000039.1 | GN04787 NZ_LVTS01000001.1 NZ | GN03842 NZ_LRCL01000001.1 | GN05729 NZ_LRCV01000001.1 | MNCRE4 NZ_JZDF01000007.1 NZ_LRCV01000001.1 | IIT-BT-08 1 NZ_KI911561.1 | MBRL 1077 NZ_CP014280.1 N | 153 ECLO NZ_JVSD01000020.1 | |||
zLsrA | Nucleotide | 1488 | NA | 25 | 4 | 33 | 27 | 32 | 27 | 35 | 30 | 156 | 21 |
Amino acid | 495 | NA | 3 | 0 | 7 | 3 | 4 | 2 | 2 | 2 | 22 | 1 | |
LsrB | Nucleotide | 1002 | 11 | 18 | 18 | 25 | 11 | 30 | 28 | 22 | 19 | 65 | 8 |
Amino acid | 333 | 1 | 1 | 0 | 1 | 1 | 1 | 2 | 2 | 2 | 7 | 0 | |
LsrC | Nucleotide | 1032 | 23 | 16 | 23 | 90 | 19 | 91 | 21 | 59 | 32 | 85 | 22 |
Amino acid | 343 | 2 | 4 | 3 | 16 | 2 | 16 | 2 | 8 | 4 | 16 | 2 | |
LsrD | Nucleotide | 978 | 1 | 17 | 3 | 67 | 12 | 31 | 13 | 29 | 12 | 83 | 3 |
Amino acid | 325 | 0 | 3 | 0 | 8 | 2 | 3 | 1 | 2 | 1 | 11 | 0 | |
LsrF | Nucleotide | 888 | 31 | 24 | 29 | 17 | 23 | 47 | 25 | 20 | 27 | 66 | 32 |
Amino acid | 295 | 2 | 2 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 12 | 1 | |
LsrG | Nucleotide | 294 | 11 | 10 | 10 | 21 | 8 | NA | 16 | 98 | 12 | 16 | 5 |
Amino acid | 97 | 2 | 3 | 1 | 0 | 1 | NA | 3 | 0 | 2 | 2 | 2 | |
LsrR | Nucleotide | 972 | 22 | 21 | 9 | 51 | 20 | 23 | 22 | 68 | 34 | 58 | 23 |
Amino acid | 323 | 2 | 1 | 0 | 5 | 1 | 2 | 2 | 5 | 2 | 1 | 1 | |
LsrK | Nucleotide | 1581 | 28 | 26 | 23 | 75 | 12 | 42 | 26 | 52 | 16 | 132 | 26 |
Amino acid | 526 | 4 | 3 | 2 | 12 | 1 | 10 | 3 | 6 | 1 | 20 | 5 | |
AI-luxS | Nucleotide | 576 | 4 | 5 | 3 | 5 | 4 | 6 | 6 | 4 | 5 | 15 | 4 |
Amino acid | 171 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
PgaA | Nucleotide | 2439 | 30 | 24 | 30 | 31 | 30 | 45 | 29 | NA | 34 | 97 | 22 |
Amino acid | 812 | 13 | 13 | 12 | 15 | 12 | 23 | 14 | NA | 14 | 35 | 13 | |
PgaB | Nucleotide | 1938 | 31 | 32 | 28 | 30 | 29 | 46 | 13 | 30 | 15 | 83 | 11 |
Amino acid | 645 | 7 | 9 | 7 | 6 | 8 | 11 | 4 | 8 | 2 | 18 | 1 | |
PgaC | Nucleotide | 1332 | 14 | 13 | 15 | 11 | 16 | 15 | 26 | 11 | 14 | 32 | 14 |
Amino acid | 443 | 0 | 1 | 2 | 3 | 2 | 2 | 1 | 1 | 1 | 1 | 4 | |
PgaD | Nucleotide | 435 | 2 | 2 | 4 | 2 | 2 | 3 | 0 | 4 | 4 | 14 | 1 |
Amino acid | 144 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 2 | 3 | 0 | |