Table 2 Summary of the 13 induced prophages in the OMM12 consortium
Phage name | Fontainebleau* | Chambord* | Moulinsart | Chantilly* | Versailles | Montmirail* | Amboise | Maintenon | Saumur | Villandry | Castelnaud* | Cormatin | Chenonceau* |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Bacteria | A. muris | A. muciniphila | A. muciniphila | A. muciniphila | B. caecimuris | B. coccoides | C. innocuum | C. innocuum | E. clostridioformis | E. clostridioformis | F. plautii | F. plautii | F. plautii |
Virsorter2 coordinates | 1,044,480–1,245,308 | 720,271–756,462 | 1,333,561–1,376,776 | 2,297,920–2,384,706 | 2,968,702–3,117,599 | 3,566,266–3,748,724 | 4,270,576–4,451,990 | 4,270,576–4,451,990 | 2,059,163–2,216,868 | 3,366,664–3,520,133 | 908,138–1,064,094 | 1,126,232–1,212,653 | 2,741,918–2,850,187 |
Vibrant coordinates | xxx | 712,320–733,658 | 1,336,379–1,370,467 | 2,290,686–2,334,293 | 2,968,702–3,025,656 | 3,570,686–3,619,939 | 4,275,457–4,448,458 | 4,275,457–4,448,458 | 2,059,163–2,105,549 | 3,367,379–3,411,110 | 908,886–959,299 | 1,129,966–1,170,339 | 2,738,687–2,785,802 |
3C coordinates (kb) | 1056–1098 | 711–724 | xxx | 2307–2324 | 2968–3027 | 3573–3616 | 4321–4399 | 4399–3 | 2065–2106 | 3375–3413 | 909–946 | xxx | 2742–2784 |
Virome coordinates | 1,058,713–1,097,953 | 712,134–742,810 | 1,335,300–1,366,646 | 2,300,756–2,337,649 | 2,968,431–3,026,527 | 3,570,533–3,616,598 | 4,320,432–4,397,754 | 4,397,737–2635 | 2,059,120–2,106,361 | 3,375,269–3,412,801 | 908,701–945,825 | 1,128,657–1,164,096 | 2,742,851–2,784,974 |
3C Signal in vitro | Yes (strong) | Yes (strong) | No | Yes (weak) | Yes (weak) | Yes (strong) | Yes (strong) | Yes (weak) | Yes (weak) | Yes (strong) | Yes (strong) | No | Yes (strong) |
3C signal in vivo | NA | Yes (strong) | No | Yes (weak) | Yes (strong) | Yes (strong) | Yes (weak) | Yes (strong) | Yes (strong) | Yes (weak) | NA | No | NA |
Virome signal in vitro | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes | No | Yes | Yes | Yes | Yes |
Virome signal in vivo | No | Yes | No | Yes | Yes | Yes | No | Yes | Yes | Yes | Yes | Yes | Yes |
Circularization signal | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes | No | Yes | Yes | Yes |
Packaging method (PhageTermVirome)/termini position (in vitro reads) | COS 5' Visual confirmation 36,423 | COS 5' Visual confirmation 194 | COS 5' Visual confirmation 351 | COS 5' Visual confirmation 15,785 | Uncertain Potential PAC | Uncertain Potential COS 5' | COS 3' Visual confirmation 76,891 (right signal weak) | DTR Short (478Â bp) 27,277 | Uncertain Potential PAC | COS 5' Visual confirmation 21,757 (left signal weak) | COS 5' Visual confirmation 24,325 | COS 5' Visual confirmation 28,255 | COS 5' Visual confirmation 2483 |
Proposed morphology (vContact2) | Siphoviridae | Â | Myoviridae | Myoviridae | Siphoviridae | Siphoviridae | Siphoviridae | Siphoviridae | Siphoviridae | Myoviridae | Â | Siphoviridae | Siphoviridae |