Table 1 Candidate prophages of the OMM¹² consortium

A. muris

KB18

0.026–0.095

Yes (Cat6)

1.053–1.120

Yes (Cat5)

Yes (TAD)

NA

NA

Yes

2.999–3.151

Yes

Yes (Cat6)

Yes (TAD)

NA

NA

3.228–3.310

Yes (Cat5)

A. muciniphila

YL44

0.038–0.072

Yes (Cat6)

Yes (TAD)

Yes (TAD)

Same

0.712–0.743

Yes

Yes (Cat5)

Yes (TAD)

Yes (TAD)

Same

Yes

1.336–1.370

Yes

Yes (Cat6)

Yes

2.291–2.337

Yes

Yes (Cat5)

Yes (depletion)

Yes (depletion)

Same

Yes

B. caecimuris

I48

0.271–0.355

Yes (Cat6)

0.922–1.008

Yes (Cat6)

Yes (TAD + loop)

1.409–1.421

Yes (Cat6)

2.969–3.118

Yes

Yes (Cat4)

Yes (loop + depletion)

Yes (TAD + loop)

Increased coverage and signal

Yes

B. coccoides

YL58

1.287–1.351

Yes (Cat5)

1.845–1.851

Yes

2.228–2.268

Yes (Cat6)

3.571–3.620

Yes

Yes (Cat6)

Yes(TAD + loop)

Yes (TAD + loop)

Same

Yes

4.091–4.112

Yes

E. clostridioformis

YL32

1.254–1.385

Yes

1.275–1.461

Yes (Cat5)

1.398–1.461

Yes

1.613–1.669

Yes

Yes (Cat5)

2.059–2.106

Yes

Yes (Cat4)

Yes (TAD + depletion signal)

Yes (TAD + loop)

Increased loop signal

Yes

2.326–2.428

Yes (Cat6)

2.914–3.014

Yes

Yes (Cat5)

3.355–3.418

Yes

Yes (Cat5)

Yes (TAD)

Yes (TAD)

Decreased signal

Yes

4.054–4.122

Yes (Cat6)

4.983–5.030

Yes

5.653–5.746

Yes (Cat6)

6.292–6.376

Yes (Cat6)

6.752–6.852

Yes (Cat6)

C. innocuum

I46

0.454–0.499

Yes (Cat6)

Yes (TAD + loop)

NA

NA

3.744–3.787

Yes

Yes (Cat5)

Yes (TAD)

NA

NA

4.275–4.452

Yes

Yes (Cat5)

Yes (multiple TADs)

Yes (TAD)

2 different phages

Yes

E. faecalis

KB18

1.672–1.774

Yes (Cat6)

1.972–2.046

Yes (Cat6)

2.899–2.914

Yes

F. plautii

YL31

0.460–0.466

Yes

0.909–1.064

Yes

Yes (Cat5)

Yes (TAD + loop)

NA

NA

Yes

1.126–1.212

Yes

Yes (Cat5)

Yes

2.738–2.785

Yes

Yes (Cat5)

Yes (TAD)

NA

NA

Yes

3.093–3.179

Yes (Cat6)

L. reuteri

I49

0.019–0.045

Yes

T. muris

YL45

2.099–2.135

Yes (Cat6)

2.100–2.144

Yes

Yes (Cat5)