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Table 1 Significant genes identified from the first-stage gene-level analysis of the HCHS/SOL data, using the PC-adjusted KRV (\(\alpha = 2.6 \times 10^{-6}\))

From: Kernel-based genetic association analysis for microbiome phenotypes identifies host genetic drivers of beta-diversity

Microbiome kernel

Significant genes

Number of common variants

P-value

Bray-Curtis

C1orf141

484

\(1.1 \times 10^{-6}\)

 

IL23R

284

\(2.4 \times 10^{-6}\)

Unweighted UniFrac

MTMR12

174

\(6.5 \times 10^{-8}\)

 

ZFR

288

\(2.5 \times 10^{-9}\)

CLR-linear

MTMR12

174

\(1.7 \times 10^{-6}\)

  1. The top 5 PCs of genome-wide genetic variability were adjusted