Table 1 Analyzed and detected antibiotic resistance genes with their relative abundance and \(\alpha\)-diversity
Number of | Detected | Abundance | \(\alpha\)-diversity | ||
|---|---|---|---|---|---|
ARGs | % of ARGs | (median) | (median) | ||
Aminoglycosides | |||||
\(aac(2')\) | L | 594 | 58% | 0 | 0 |
E | 6 | 83% | 0 | 0 | |
aac(3) | L | 2121 | 65% | 0.49 | 1 |
E | 27 | 89% | 0 | 0 | |
\(aac(6')\) | L | 1861 | 60% | 0.68 | 2 |
E | 51 | 100% | 0 | 0 | |
\(aph(2^{\prime \prime })\) | L | 306 | 42% | 0 | 0 |
E | 6 | 100% | 0 | 0 | |
\(aph(3')\) | L | 1144 | 69% | 0.53 | 1 |
E | 26 | 81% | 0.69 | 1 | |
aph(6) | L | 2551 | 70% | 0 | 0 |
E | 8 | 88% | 0 | 0 | |
\(\beta\)-lactams | |||||
A | L | 5038 | 74% | 1.72 | 11 |
E | 105 | 95% | 1.47 | 5 | |
B1/B2 | L | 1054 | 56% | 0 | 0 |
E | 55 | 98% | 0 | 0 | |
B3 | L | 1921 | 86% | 0.71 | 3 |
E | 14 | 86% | 0 | 0 | |
C | L | 1224 | 93% | 0.28 | 0 |
E | 45 | 100% | 0 | 0 | |
D | L | 1771 | 77% | 0 | 0 |
E | 93 | 96% | 0 | 0 | |
Macrolides | |||||
erm | L | 554 | 59% | 0.60 | 2 |
E | 46 | 87% | 1.39 | 6 | |
mph | L | 430 | 55% | 0 | 0 |
E | 19 | 100% | 0 | 0 | |
Quinolones | |||||
qnr | L | 273 | 68% | 0 | 0 |
E | 20 | 95% | 0 | 0 | |
Tetracyclines | |||||
Efflux | L | 381 | 96% | 0 | 0 |
E | 34 | 100% | 0.22 | 0 | |
Enzyme | L | 250 | 95% | 0 | 0 |
E | 12 | 100% | 0 | 0 | |
Ribosomal protection | L | 1031 | 98% | 1.36 | 10 |
E | 21 | 100% | 2.62 | 14 |