Skip to main content

Table 1 Data summary of PBL transcriptome and metagenome

From: Lignocellulose degradation in Protaetia brevitarsis larvae digestive tract: refining on a tightly designed microbial fermentation production line

Sample

Host

Microbiome

 

Genomea

Midgut transcriptome

Hindgut transcriptome

Midgut

Hindgut

Total readsb

-

104,357,624

134,887,484

1,643,212,636

1,985,361,688

Total basesb

-

13,044,703,000

20,171,214,779

165,332,536,581

199,652,618,725

Contigs

-

-

-

1,337,306

3,930,676

N50

-

-

-

1792

1854

CDS

33,654

8,391

8,159

2,184,816

6,438,643

CAZy modules

700

149

142

40,338

125,682

LDMs

182

40

40

12,845

40,616

Cellulases

2

1

1

280

1031

Hemicellulases

73

14

14

6516

18,781

Hemicellulases and cellulases

31

15

15

2493

7741

Ligninases

42

3

3

1038

2089

Lignocellulose-binding modules

34

7

7

2518

10,974

  1. LDMs lignocellulose degradation-related modules
  2. aPB genome data from Wang et al. (2019)
  3. bReads and bases after quality trimming