Table 2 Combining sample-specific metagenomic databases and generic databases
From: Increasing the power of interpretation for soil metaproteomics data
Combined databases | Size of the database (in residues) | Number of sequence entries | Attribution rate (%) | |||
|---|---|---|---|---|---|---|
Mean | sd (%) | Mean | sd (%) | Mean | sd (%) | |
SGC_0.30 +NCBI_0.30 | 5,849,545 | 1.9 | 15,340 | 2.1 | 23.76 | 0.2 |
SGCp_0.30 +NCBIp_0.30 | 220,207 | 8.8 | 18,644 | 8.8 | 23.73 | 6.9 |
FGS_0.30 +NCBI_0.30 | 4,670,124 | 2.3 | 17,101 | 2.4 | 24.98 | 0.6 |
FGS_0.30 +SGC_0.30 | 1,990,818 | 1.7 | 18,073 | 2.5 | 25.94 | 0.4 |
FGS_0.30 +SGC_0.30 +NCBI_0.30 | 6,275,438 | 1.9 | 25,298 | 2.3 | 26.21 | 0.9 |
FGS_0.30 +NCBIp_0.30 | 525,294 | 2.6 | 18,878 | 2.5 | 24.84 | 1.1 |
FGS_0.30 +SGCp_0.30 +NCBIp_0.30 | 646,100 | 1.9 | 28,603 | 4.8 | 27.24 | 5.8 |
PLASS_0.30 +NCBI_0.30 | 5,351,198 | 2.1 | 15,541 | 2.0 | 22.42 | 1.2 |
PLASS_0.30 +SGC_0.30 | 2,673,152 | 1.8 | 16,512 | 2.2 | 24.83 | 0.6 |
PLASS_0.30 +SGC_0.30 +NCBI_0.30 | 6,957,772 | 1.8 | 23,738 | 2.1 | 24.62 | 0.5 |
PLASS_0.30 +NCBIp_0.30 | 1,206,368 | 2.2 | 17,318 | 2.2 | 22.05 | 0.7 |
PLASS_0.30 +SGCp_0.30 +NCBIp_0.30 | 1,327,067 | 1.2 | 27,042 | 5.2 | 25.42 | 4.7 |
MGH-FGS_0.30 +SGC_0.30 | 3,158,743 | 1.8 | 15,862 | 2.1 | 24.40 | 0.4 |
MGH-FGS_0.30 +SGC _0.30 +NCBI_0.30 | 7,443,363 | 1.7 | 23,088 | 2.0 | 24.83 | 0.8 |
MGH-6RF_0.30 + SGC _0.30 | 2,629,015 | 2.0 | 15,664 | 1.9 | 23.43 | 0.8 |
MGH-6RF_0.30 + SGC _0.30 +NCBI_0.30 | 6,913,635 | 1.9 | 22,890 | 1.9 | 23.58 | 0.4 |