Fig. 2

Volcano plot illustrating the enrichment and depletion patterns of bacterial and fungal microbiomes in the diseased organs compared with the healthy organs. a Effect of FWD on the abundance of bacterial ZOTUs (relative abundance > 0.1%, 2549 in total). The symbols correspond to FWD-enriched (square) and FWD-depleted (triangle) ZOTUs. b Effect of FWD on the abundance of fungal ZOTUs (relative abundance > 0.1%, 1030 in total). Note the functional guild information is presented in Fig. S6b. c 0.001).Relative abundance of potential beneficial bacteria is significantly increased in the diseased plants compared with the healthy plants (P < 0.001). The enrichment and depletion patterns of potential beneficial bacteria in the diseased root, stem, and fruit organs compared with healthy organs are presented in Fig. S6c. d (< 0.00Relative abundance of plant pathogenic fungi is significantly increased in the diseased plants compared with the healthy plants (P < 0.001).Taxonomic information for the top enriched and depleted taxa are provided in Table S8 and Table S9. e Several bacterial ZOTUs enriched in the diseased plants were also identified as the core bacterial taxa in both healthy and diseased plants f Several fungal ZOTUs enriched in the diseased plants were also identified as the core fungal taxa in both healthy and diseased plants