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Table 6 Numbers of differentially abundant taxa by valid methods on data normalized by rarefaction or CSS

From: Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach (ZINQ)

  Rarefaction CSS
Corncob 16
DESeq2 34
EdgeR 33
LDM 11 23
Limma 24
Linear regression 5 25
MetagenomeSeq 40
Monocle 121 20
QRank 13 12
ZINQ-MinP 48 37
ZINQ-Cauchy 49 41
  1. : method that inflates type I error