Table 4 Performance on the human gut plasmidome. Number of plasmids, the median plasmid length (in kbp), and performance measures for all tools
From: SCAPP: an algorithm for improved plasmid assembly in metagenomes
Tool | # plasmids | Median length | Precision | Recall | F1 |
|---|---|---|---|---|---|
Recycler | 93 | 2.1 | 15.1 | 37.8 | 21.5 |
mpSpades | 53 | 3.0 | 11.3 | 9.4 | 10.3 |
SCAPP | 82 | 2.4 | 17.1 | 35.9 | 23.1 |