Joint contributions of the gut microbiota and host genetics to feed efficiency in chickens

Microbiome

Table 1 Detailed information on the SNPs associated with residual feed intake (RFI)

SNP	GGA	Position^a	MAF^b (minor/major)	P value	Near gene	Gene name	Location
rs313164887	2	63367934 /63158673	0.31 (C/T)	2.78 × 10⁻⁷	ENSGALG00000012748	ELOVL2	Intronic
rs317782869	2	117906298 /117474376	0.33 (C/A)	9.08 × 10⁻⁸	ENSGALG00000031693	KCNB2	Intronic
rs317782869	2	117906298 /117474376	0.33 (C/A)	9.08 × 10⁻⁸	ENSGALG00000034751 (dist=157865)	TRPA1	–
rs316904613	20	6205401 /6013969	0.10 (C/G)	2.24 × 10⁻⁷	ENSGALG00000004593 (dist=38515)	SULF2	Intergenic
rs316904613	20	6205401 /6013969	0.10 (C/G)	2.24 × 10⁻⁷	ENSGALG00000004621 (dist=180107)	PREX1	Intergenic
rs312419026	20	6450286 /6258855	0.10 (G/A)	2.64 × 10⁻⁷	ENSGALG00000004621	PREX1	Intronic

^aThe first and second coordinates are the position in the galGal5 and galGal6 genome assembly, respectively
^bThe allele frequency of the first listed marker

ISSN: 2049-2618