Fig. 10

Reanalysis of the data from [7]. In the left of panel A, we compare the profiles obtained by using Kraken2 on the conventional shotgun (shotgun + kraken2) data and the RMS data (ddRADseq + kraken2). In the original paper, the same comparison was made using MetaPhlAn instead of Kraken2. In addition, we also used our approach described in this paper on the RMS data (ddRADseq + COLS). The marker-type indicates the samples, and the coloring the methods. In the right of panel B, we focus only on a strain resolution of the species F. prausnitzii, being the most dominant species in these samples. The nine strains listed are from the MGnify database (https://www.ebi.ac.uk/metagenomics/)