Table 1 Comparison of six de novo assembled SIHUMIx strains to NCBI RefSeq data
From: Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome
Species | Complete de novo genome assembly | Missed in RefSeq entry | ||||||
|---|---|---|---|---|---|---|---|---|
Genome size | Plasmid(s) | Genes | CDS | Bp | Genes | CDS | CDS ≤ 100aa | |
A. caccae | 3,590,716 | – | 3513 | 3440 | 8306 | 14 | 10 | 3 |
B. producta | 6,245,307 | – | 5766 | 5678 | 169,296 | 238 | 198 | 49 |
B. thetaiotaomicron | 6,271,157 | 33,036 | 5027 | 4940 | 49,610 | 61 | 56 | 5 |
C. butyricum | 3,921,278 (Chr. 1) | 6059 (Pl. 1) | 4269 | 4142 | 115,260 | 169 | 74 | 12 |
770,199 (Chr. 2) | 8060 (Pl. 2) | |||||||
L. plantarum | 3,242,936 | 7218 | 3151 | 3064 | 47,954 | 48 | 23 | 11 |
C. ramosum | 3,247,604 | – | 3108 | 3025 | 24,277 | 35 | 3 | 0 |