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Table 1 Comparison of six de novo assembled SIHUMIx strains to NCBI RefSeq data

From: Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome

Species

Complete de novo genome assembly

Missed in RefSeq entry

Genome size

Plasmid(s)

Genes

CDS

Bp

Genes

CDS

CDS ≤ 100aa

A. caccae

3,590,716

3513

3440

8306

14

10

3

B. producta

6,245,307

5766

5678

169,296

238

198

49

B. thetaiotaomicron

6,271,157

33,036

5027

4940

49,610

61

56

5

C. butyricum

3,921,278 (Chr. 1)

6059 (Pl. 1)

4269

4142

115,260

169

74

12

770,199 (Chr. 2)

8060 (Pl. 2)

L. plantarum

3,242,936

7218

3151

3064

47,954

48

23

11

C. ramosum

3,247,604

3108

3025

24,277

35

3

0