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Table 1 Comparison of six de novo assembled SIHUMIx strains to NCBI RefSeq data

From: Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome

Species Complete de novo genome assembly Missed in RefSeq entry
Genome size Plasmid(s) Genes CDS Bp Genes CDS CDS ≤ 100aa
A. caccae 3,590,716 3513 3440 8306 14 10 3
B. producta 6,245,307 5766 5678 169,296 238 198 49
B. thetaiotaomicron 6,271,157 33,036 5027 4940 49,610 61 56 5
C. butyricum 3,921,278 (Chr. 1) 6059 (Pl. 1) 4269 4142 115,260 169 74 12
770,199 (Chr. 2) 8060 (Pl. 2)
L. plantarum 3,242,936 7218 3151 3064 47,954 48 23 11
C. ramosum 3,247,604 3108 3025 24,277 35 3 0