Table 2 Overview of tested libraries: case 1 samples. For viruses enclosed in the samples, reference genomes were included in the genome set used for VirBait design. Sample matrix, animal species, the detected virus, and the references are given. The amount of virus reads in the sequence datasets found in the originally sequenced libraries and in the VirBaits treated libraries is given as percentage. Libraries were made from RNA except the one marked by an asterisk, which was made from DNA
Library ID | Sample material | Verified virus | Virus portion | Data set size VirBaitsa | Reference | |
|---|---|---|---|---|---|---|
Generic HTS | VirBaits | |||||
L02725 | Brain, Strix nebulosa | WNV | 0.14% | 58.7% | 2678 | [20] |
L02726 | Spleen, Strix nebulosa | WNV | 5.6% | 91.4% | 3857 | [20] |
L03224 | Spinal cord, Equus sp. | WNV | Not sequenced | 0.2% | 1,305,078 | Unpublished |
L03038 | Brain, Bubo scandiacus | WNV | 0.0003% | 0.03% | 155,648 | Santos et al., submitted |
L03451 | Spinal cord, Equus sp. | WNV | 0.0006% | 0.2% | 907,780 | [21] |
L02838 | Brain, Canis lupus | RABV | 0.002% | 7.9% | 158,514 | Unpublished |
L03007 | Brain, Tragelaphus sp. | RABV | 1.5% | 97.5% | 890,113 | Unpublished |
L03015 | Salivary gland, Tragelaphus sp. | RABV | 0.005% | 45.8% | 1,060,955 | Unpublished |
L02912 | Brain, Rattus sp. | BoDV | 0.75% | 85.2% | 183,579 | Schlottau et al., in preparation |
L02913 | Brain, Rattus sp. | VSBV-1 | 0.0004% | 0.6% | 42,793 | Schlottau et al., in preparation |
L02456 | Soft Palate Cells, Bos taurus | FMDV | 0.002% | 2.0% | 719,153 | [22] |
L02568* | Food matrix spiked with a mock community | BHV | 0.0003% | 0.04% | 181,338 | [23] |
L02569 | BVDV BDV | 0% 0.00001% | 0.007% 0.01% | 506,465 | ||
L02762* | Spleen, Sus scrofa | ASFV | 0.05% | 20.7% | 1,353,258 | Unpublished |
L02651 | Organ pool, Gallus gallus | IAV (H5N8) | 0.01% | 70.1% | 280,247 | Unpublished |
L03706 | Brain, Gallus gallus | IAV (H3N1) | 0.5% | 77.0% | 317,862 | Unpublished |
L03827 | Nasal wash, Mustela putorius | SARS-CoV-2 | 0.3% | 53.8% | 1248 | [24] |
L03828 | Nasal wash, Mustela putorius | SARS-CoV-2 | 0% | 9.1% | 449 | [24] |
L03829 | Nasal conchae, Mustela putorius | SARS-CoV-2 | 0.00004% | 0.001% | 194,891 | [24] |
L03830 | Nasal conchae, Mustela putorius | SARS-CoV-2 | 0.02% | 14.9% | 325,694 | [24] |
L03862 | Nasal conchae, Mustela putorius | SARS-CoV-2 | 0.0004% | 0.2% | 960,594 | [24] |
L03862 | Nasal conchae, Mustela putorius | SARS-CoV-2 | 0.001% | 0.5% | 946,268 | [24] |
L03862 | Brain, Mustela putorius | SARS-CoV-2 | 0.00002% | 0.005% | 294,146 | [24] |