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Table 2 Overview of tested libraries: case 1 samples. For viruses enclosed in the samples, reference genomes were included in the genome set used for VirBait design. Sample matrix, animal species, the detected virus, and the references are given. The amount of virus reads in the sequence datasets found in the originally sequenced libraries and in the VirBaits treated libraries is given as percentage. Libraries were made from RNA except the one marked by an asterisk, which was made from DNA

From: Next-generation diagnostics: virus capture facilitates a sensitive viral diagnosis for epizootic and zoonotic pathogens including SARS-CoV-2

Library ID Sample material Verified virus Virus portion Data set size VirBaitsa Reference
Generic HTS VirBaits
L02725 Brain, Strix nebulosa WNV 0.14% 58.7% 2678 [20]
L02726 Spleen, Strix nebulosa WNV 5.6% 91.4% 3857 [20]
L03224 Spinal cord, Equus sp. WNV Not sequenced 0.2% 1,305,078 Unpublished
L03038 Brain, Bubo scandiacus WNV 0.0003% 0.03% 155,648 Santos et al., submitted
L03451 Spinal cord, Equus sp. WNV 0.0006% 0.2% 907,780 [21]
L02838 Brain, Canis lupus RABV 0.002% 7.9% 158,514 Unpublished
L03007 Brain, Tragelaphus sp. RABV 1.5% 97.5% 890,113 Unpublished
L03015 Salivary gland, Tragelaphus sp. RABV 0.005% 45.8% 1,060,955 Unpublished
L02912 Brain, Rattus sp. BoDV 0.75% 85.2% 183,579 Schlottau et al., in preparation
L02913 Brain, Rattus sp. VSBV-1 0.0004% 0.6% 42,793 Schlottau et al., in preparation
L02456 Soft Palate Cells, Bos taurus FMDV 0.002% 2.0% 719,153 [22]
L02568* Food matrix spiked with a mock community BHV 0.0003% 0.04% 181,338 [23]
L02569 BVDV
BDV
0%
0.00001%
0.007%
0.01%
506,465
L02762* Spleen, Sus scrofa ASFV 0.05% 20.7% 1,353,258 Unpublished
L02651 Organ pool, Gallus gallus IAV (H5N8) 0.01% 70.1% 280,247 Unpublished
L03706 Brain, Gallus gallus IAV (H3N1) 0.5% 77.0% 317,862 Unpublished
L03827 Nasal wash, Mustela putorius SARS-CoV-2 0.3% 53.8% 1248 [24]
L03828 Nasal wash, Mustela putorius SARS-CoV-2 0% 9.1% 449 [24]
L03829 Nasal conchae, Mustela putorius SARS-CoV-2 0.00004% 0.001% 194,891 [24]
L03830 Nasal conchae, Mustela putorius SARS-CoV-2 0.02% 14.9% 325,694 [24]
L03862 Nasal conchae, Mustela putorius SARS-CoV-2 0.0004% 0.2% 960,594 [24]
L03862 Nasal conchae, Mustela putorius SARS-CoV-2 0.001% 0.5% 946,268 [24]
L03862 Brain, Mustela putorius SARS-CoV-2 0.00002% 0.005% 294,146 [24]
  1. adataset size is given in terms of reads