Table 1 Haloarchaea-assigned sequences in other publicly available metagenomic and metataxonomic studies
From: The human gut archaeome: identification of diverse haloarchaea in Korean subjects
Accession number | Study type | Amplified region | Study name | Haloarchaea-assigned taxon |
|---|---|---|---|---|
ERP001956 | Metagenomic | N/A | Diagnostic Metagenomics: A Culture-Independent Approach to the Investigation of Bacterial Infections | c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae |
SRP001634 | Metagenomic | N/A | Microbial composition of samples from infant gut | c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__; s__ c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halococcus; s__ c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halorhabdus; s__ |
SRP073172 | Metagenomic | N/A | DNA from FIT can replace stool for microbiota-based colorectal | c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__; s__ |
SRP096283 | Metagenomic | N/A | Human gut metagenome and metatranscriptome raw sequence reads | c__Halobacteria |
SRP118697 | Metagenomic | N/A | Microbiome and Worm Infection | c__Halobacteria; o__Halobacteriales |
SRP128128 | Metagenomic | N/A | Dynamics of human gut microbiota and metabolites in response to prebiotic interventions | c__Halobacteria c__Halobacteria; o__Halobacteriales c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halobacterium c__Halobacteria; o__Halobacteriales; f__Halococcaceae; g__Halococcus c__Halobacteria; o__Natrialbales; f__Natrialbaceae; g__Natronococcus |
ERP015450 | Metagenomic | N/A | Dysbiosis of gut microbiota contributes to the pathogenesis of hypertension | c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Haloarcula; s__ |
ERP005883 | Metataxonomic | V4 | Effects of cholera on the human gut microbiota, and interactions between human gut microbes and Vibrio cholera | c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__; s__ |
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halorubrum; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Haloterrigena; s__ | ||||
ERP010229 | Metataxonomic | V4 | Gut microbial succession follows acute secretory diarrhea in humans | c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__; s__ |
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halalkalicoccus; s__jeotgali | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halococcus; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halococcus; s__hamelinensis | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halorhabdus; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Haloterrigena; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Natronococcus; s__ | ||||
ERP021093 | Metataxonomic | V4 | Gut microbiome from patients obtained by 16s rRNA sequencing | c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__; s__ |
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__GA41; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Haloarcula; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halobacteriaceae; s__GX3 | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halobacterium; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halococcus; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halomicrobium; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halomicrobium; s__mukohataei | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halonotius; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Haloplanus; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Haloquadratum; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halorhabdus; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halorubrum; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Natronomonas; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__XKL75; s__ | ||||
c__Halobacteria; o__Halobacteriales; f__MSP41; g__; s__ | ||||
ERP021896 | Metataxonomic | V4 | Moving pictures of the human microbiome | c__Halobacteria; o__Halobacteriales |
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halarchaeum | ||||
c__Halobacteria; o__Halobacteriales; f__Halobacteriaceae; g__Halobacterium | ||||
ERP107577 | Metataxonomic | V3orV4 | LogMPIE: Landscape Of Gut Microbiome - Pan India Exploration | c__Halobacteria |
c__Halobacteria; o__Haloferacales | ||||
c__Halobacteria; o__Haloferacales; f__Haloferacaceae | ||||
c__Halobacteria; o__Haloferacales; f__Halorubraceae; g__Haloparvum | ||||
c__Halobacteria; o__Natrialbales; f__Natrialbaceae | ||||
ERP109659 | Metataxonomic | V3-V4 | Gut microbiota in Parkinson's disease: temporal stability and disease progression | c__Halobacteria; o__Halobacteriales |