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Table 1 The eHOMD training sets performed well for species/supraspecies taxonomy assignment of an independent long-read 16S rRNA gene sinonasal dataset

From: Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets

  # ASVs # Reads % ASVs % Reads
NCBI 16S Microbial blastn 178 140,455 87.3 97.3
eHOMD blastn 188 143,274 92.2 99.3
eHOMD FL_Compilation_TS 194 142,843 95.1 99.0
eHOMD V1V3_Supraspecies_TS 201 144,279 98.5 99.9
  1. Columns three and four indicate the % of ASVs and reads, respectively, assigned subgenus-level taxonomy using each of the four approaches tested