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Fig. 3 | Microbiome

Fig. 3

From: Single-cell genomics of uncultured bacteria reveals dietary fiber responders in the mouse gut microbiota

Fig. 3

Comparative analysis of the inulin responder Bacteroides genomes IMSAGC_001 and IMSAGC_004. a Phylogenetic tree of inulin-associated Bacteroides spp. found in this study and reference Bacteroides strains. The tree is based on the alignment of concatenated amino acid sequences of collocated sets of ubiquitous, single-copy genes within a phylogenetic lineage, as used in CheckM analysis. IMSAGC_001 and IMSAGC_004 are indicated by black circles. b Upset plot comparing shared orthogroup counts between reference Bacteroides strains. Orthogroups shared between IMSAGC_001 and other Bacteroides group members are colored in orange, whereas orthogroups shared between IMSAGC_004 and other Bacteroides group members are colored in blue. Orthogroups shared between IMSAGC_001, IMSAGC_004, and other members are colored in green. Bt, B. thetaiotaomicron; Bo, B. ovatus; Bc, B. caccae; Bv, B. vulgatus; Bu, B. uniformis; Bf, B. fragilis; Ba, B. acidifaciens

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Microbiome

ISSN: 2049-2618

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