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Table 3 Functional distance-based PERMANOVA results for differences in general functional community composition (EggNOG) and carbohydrate-active enzymes (CAZY) between host species and host environments based on shared abundance (Bray-Curtis) and shared presence (Jaccard) of functions (P values are adjusted via Hommel procedure)

From: Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms

Distance Factor Data DF F P P Hommel R 2 adj. R2
Bray-Curtis Organism CAZY 10,47 7.3323 0.0001 0.0001 0.6094 0.5263
EggNOG categories 10,49 5.6088 0.0001 0.0001 0.5337 0.4386
EggNOG gene + description 10,49 4.4454 0.0001 0.0001 0.4757 0.3687
EggNOG (MEGAN categories) 10,49 12.2594 0.0001 0.0001 0.7144 0.6562
EggNOG (MEGAN gene) 10,49 8.2788 0.0001 0.0001 0.6282 0.5523
Environment CAZY 1,56 5.4257 0.0001 0.0007 0.0883 0.0721
EggNOG categories 1,58 2.5429 0.0195 0.0195 0.0420 0.0255
EggNOG gene + description 1,58 3.0662 0.0001 0.0007 0.0502 0.0338
EggNOG (MEGAN categories) 1,58 3.7703 0.0015 0.0030 0.0610 0.0448
EggNOG (MEGAN gene) 1,58 3.7271 0.0002 0.0012 0.0604 0.0442
Jaccard Organism CAZY 10,47 3.9098 0.0001 0.0001 0.4541 0.3380
EggNOG categories 10,49 3.7179 0.0001 0.0001 0.4314 0.3154
EggNOG gene + description 10,49 2.5275 0.0001 0.0001 0.3403 0.2057
EggNOG (MEGAN categories) 10,49 7.7781 0.0001 0.0001 0.6135 0.5346
EggNOG (MEGAN gene) 10,49 5.4989 0.0001 0.0001 0.5288 0.4326
Environment CAZY 1,56 2.5866 0.0003 0.0021 0.0442 0.0271
EggNOG categories 1,58 1.4180 0.1442 0.1442 0.0239 0.0070
EggNOG gene + description 1,58 1.9535 0.0004 0.0024 0.0326 0.0159
EggNOG (MEGAN categories) 1,58 3.0425 0.0460 0.0920 0.0498 0.0335
EggNOG (MEGAN gene) 1,58 3.1222 0.0001 0.0009 0.0511 0.0347