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Table 1 Features of predicted pathogenic E. coli strains by sample. Relative abundance, predicted serotype, predicted MLST type, and predicted pathogenic type are reported. Extended detail is provided in Additional file 1: Tables S8-S10

From: Visualization-assisted binning of metagenome assemblies reveals potential new pathogenic profiles in idiopathic travelers’ diarrhea

E. coli bin Relative abundance (%) Predicted serotype Predicted MLST type Predicted pathogenic type
10 (a) 6.28 H4 ST-10 ExPEC
10 island 0.06 NT NT TSS genes
78 (a) 17.63 O1:H7 Unknown DAEC
78 island 2 0.06 NT NT EHEC gene
101 1.05 O162:H33 ST-378 EPEC
101 island 0.01 NT NT EHEC genes
538 3.37 O89:H33 NT ExPEC
678 (b) 13.12 O69:H5 NT EHEC
678 island 3.52 NT NT ExPEC genes
715 (b) 0.12 H15 NT ExPEC genes
715 island 0.02 NT NT EHEC genes
6163 (a) 78.90 O145 ST-10 EPEC
6163 (b) 14.70 O111:H8 NT EHEC
6163 (c) 0.73 O166:H15 NT ExPEC
6165 island 0.66 NT NT EPEC/EAEC genes
6168 (b) 0.78 O111 NT EPEC?
50076 (a) 67.00 H2 ST-10 ExPEC?
50076 (c) 4.54 O99:H33 NT ExPEC?
50076 island 1 8.97 NT NT ExPEC genes
50076 island 3 0.26 NT NT TTSS genes
50395 15.00 H8 ST-590 EPEC
80129 (b) 0.15 H34 NT ExPEC/NMEC
80142 8.70 H8 Unknown ExPEC
80142 island 1 0.14 NT NT EPEC genes
  1. Defining features and definitions:
  2. Enterotoxigenic E. coli (ETEC): heat labile toxin, heat stable toxin
  3. Enteroaggregative E. coli (EAEC): Aaf fimbriae, dispersin
  4. Enteropathogenic E. coli (EPEC): LEE, STX-, bundle-forming pilus
  5. Enterohemorrhagic E. coli (EHEC): LEE, STX+, Efa1 adhesin, ToxB
  6. Diffusely adherent E. coli (DAEC): Afa/Dr. fimbriae
  7. Neonatal meningitis E. coli (NMEC): K1 capsule, Ibe invasion proteins
  8. LEE locus of enterocyte effacement, TTSS type three secretion system, STX Shiga toxin, ND not determined, NT not tested, ? probable but not conclusive