Table 1 Features of predicted pathogenic E. coli strains by sample. Relative abundance, predicted serotype, predicted MLST type, and predicted pathogenic type are reported. Extended detail is provided in Additional file 1: Tables S8-S10
E. coli bin | Relative abundance (%) | Predicted serotype | Predicted MLST type | Predicted pathogenic type |
|---|---|---|---|---|
10 (a) | 6.28 | H4 | ST-10 | ExPEC |
10 island | 0.06 | NT | NT | TSS genes |
78 (a) | 17.63 | O1:H7 | Unknown | DAEC |
78 island 2 | 0.06 | NT | NT | EHEC gene |
101 | 1.05 | O162:H33 | ST-378 | EPEC |
101 island | 0.01 | NT | NT | EHEC genes |
538 | 3.37 | O89:H33 | NT | ExPEC |
678 (b) | 13.12 | O69:H5 | NT | EHEC |
678 island | 3.52 | NT | NT | ExPEC genes |
715 (b) | 0.12 | H15 | NT | ExPEC genes |
715 island | 0.02 | NT | NT | EHEC genes |
6163 (a) | 78.90 | O145 | ST-10 | EPEC |
6163 (b) | 14.70 | O111:H8 | NT | EHEC |
6163 (c) | 0.73 | O166:H15 | NT | ExPEC |
6165 island | 0.66 | NT | NT | EPEC/EAEC genes |
6168 (b) | 0.78 | O111 | NT | EPEC? |
50076 (a) | 67.00 | H2 | ST-10 | ExPEC? |
50076 (c) | 4.54 | O99:H33 | NT | ExPEC? |
50076 island 1 | 8.97 | NT | NT | ExPEC genes |
50076 island 3 | 0.26 | NT | NT | TTSS genes |
50395 | 15.00 | H8 | ST-590 | EPEC |
80129 (b) | 0.15 | H34 | NT | ExPEC/NMEC |
80142 | 8.70 | H8 | Unknown | ExPEC |
80142 island 1 | 0.14 | NT | NT | EPEC genes |