Table 1 Populations (OTUs) and associated genomes (MAGs) implicated in mediating processes in the biogeochemical model
From: Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake
Biogeochemical process | Classification | OTU/MAG | Metabolic versatility (genes) |
|---|---|---|---|
Iron oxidation | Sulfuricella denitrificans/Sideroxydans lithotrophicus ES-1 | seq6/bin.59 | Sulfur cycling (dsrAB); Denitrification (nosZ) |
Sulfur oxidation | Sulfuritalea hydrogenivorans | seq335/bin.15 | Denitrification (nosZ) |
Methane oxidation | Methylobacter tundripaludum | seq172/bin.78 | Denitrification (nxrAB, nirK, norBC) |
Methanol oxidation | Methyloterna versitalis | seq3/bin.71 | NA |
Ammonia oxidation | Nitrosospira briensis | seq39/bin.19 | Denitrification (nirK) |
Denitrification | Bacteroidetes | Various | NA |
Iron reduction | Rhodoferax ferrireducens T118 | seq12/bin.4 | Denitrification (nxrAB, nirS) |
Iron reduction | Geobacter | seq228_1/bin.34 | NA |
Sulfate reduction | Desulfatirhabdium butyrativorans strain HB1 | seq106/bin.25 | NA |