Table 1 Summary of the integron distribution in the collection of 73,655 all currently available bacteria whole (complete and draft) genomes identified by I-VIP developed in this study. All sequences in bacteria whole (complete and draft) genomes were annotated into chromosomes and plasmids by NCBI GenBank annotation and curated by PlasFlow. The chromosomes/plasmids of complete genomes annotated by PlasFlow were compared to the GenBank annotation, as indicated in the brackets
Database | Position | Integron types | Total No. | A | B | C | D | E |
|---|---|---|---|---|---|---|---|---|
WGD complete | Chromosome | All integrons | 1182 | 106 (97) | 40 (35) | 490 (486) | 24 (22) | 522 (455) |
ARG-carrying integrons | 215 | 103 | 37 | 36 | 13 | 26 | ||
Plasmid | All integrons | 403 | 232 (241) | 83 (88) | 0 (4) | 21 (23) | 67 (134) | |
ARG-carrying integrons | 371 | 229 | 81 | 0 | 20 | 41 | ||
WGD draft | Chromosome | All integrons | 849 | 419 | 221 | 111 | 67 | 31 |
ARG-carrying integrons | 716 | 412 | 216 | 11 | 41 | 36 | ||
Plasmid | All integrons | 6 | 2 | 3 | 0 | 0 | 1 | |
ARG-carrying integrons | 7 | 2 | 3 | 0 | 0 | 2 | ||
Plasmids | Plasmid | All integrons | 537 | 280 | 84 | 60 | 18 | 95 |
ARG-carrying integrons | 478 | 278 | 79 | 54 | 18 | 49 |