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Table 2 Relative abundance of the different species between postmenopausal breast cancer patients and postmenopausal healthy controls

From: Breast cancer in postmenopausal women is associated with an altered gut metagenome

  P value q value Control_mean Control_sd Case_mean Case_sd
Increased in postmenopausal breast cancer patients
Escherichia_coli 1.45E−07 4.77E−05 1.04E−02 4.34E−02 3.74E−02 8.18E−02
Shigella_sp_D9 1.86E−07 4.77E−05 1.80E−06 8.35E−06 5.36E−06 1.50E−05
Escherichia_sp_3_2_53FAA 3.03E−07 4.77E−05 6.92E−05 2.96E−04 2.40E−04 5.14E−04
Shigella_sonnei 3.01E−07 4.77E−05 4.38E−06 1.94E−05 1.46E−05 3.42E−05
Escherichia_sp_1_1_43 6.49E−07 8.17E−05 2.53E−06 1.11E−05 8.11E−06 1.84E−05
Proteus_mirabilis 1.53E−06 1.61E−04 1.94E−06 5.26E−06 1.46E−03 9.47E−03
Shigella_boydii 2.17E−06 1.95E−04 3.07E−06 1.29E−05 1.01E−05 2.27E−05
Vibrio_cholerae 2.66E−06 2.09E−04 1.18E−06 3.46E−06 2.95E−05 1.17E−04
Escherichia_fergusonii 1.25E−05 8.72E−04 3.52E−07 1.68E−06 1.67E−06 3.34E−06
Escherichia_sp_4_1_40B 1.86E−05 1.06E−03 1.60E−06 7.36E−06 4.13E−06 1.06E−05
Shigella_flexneri 1.75E−05 1.06E−03 2.86E−06 1.20E−05 1.20E−05 4.58E−05
Acinetobacter_baumannii 5.39E−05 2.83E−03 1.73E−06 5.39E−06 1.25E−05 5.13E−05
Escherichia_sp_TW09276 8.01E−05 3.88E−03 6.60E−07 3.13E−06 1.95E−06 4.75E−06
Actinomyces_sp_HPA0247 9.98E−05 4.42E−03 2.65E−08 9.16E−08 1.67E−07 3.52E−07
Acinetobacter_johnsonii 1.23E−04 4.46E−03 4.28E−08 1.64E−07 5.64E−06 3.32E−05
Providencia_rettgeri 1.28E−04 4.46E−03 2.39E−06 7.06E−06 1.05E−05 3.25E−05
Lactobacillus_mucosae 1.27E−04 4.46E−03 4.19E−07 2.14E−06 5.36E−05 3.52E−04
unclassified_Citrobacter_sp._30_2 2.12E−04 7.02E−03 1.93E−04 1.12E−03 6.39E−04 2.27E−03
Citrobacter_sp_30_2 2.58E−04 8.11E−03 7.53E−07 3.99E−06 2.59E−06 7.86E−06
Porphyromonas_uenonis 4.41E−04 1.32E−02 7.70E−07 2.88E−06 1.19E−06 3.73E−06
Citrobacter_koseri 4.81E−04 1.38E−02 2.49E−05 5.29E−05 8.09E−05 1.87E−04
Desulfovibrio_piger 5.27E−04 1.44E−02 1.14E−04 3.37E−04 3.15E−04 7.13E−04
Klebsiella_sp_1_1_55 7.03E−04 1.62E−02 3.14E−06 8.91E−06 7.58E−06 1.77E−05
Enterococcus_gallinarum 6.76E−04 1.62E−02 2.62E−07 8.17E−07 1.48E−05 8.63E−05
Salmonella_enterica 6.49E−04 1.62E−02 4.29E−05 9.78E−05 1.49E−04 4.36E−04
Erwinia_amylovora 8.12E−04 1.71E−02 1.23E−08 5.96E−08 8.77E−07 3.02E−06
Sodalis_glossinidius 8.15E−04 1.71E−02 3.44E−07 2.09E−06 1.55E−06 5.56E−06
Acinetobacter_radioresistens 8.57E−04 1.74E−02 1.15E−08 7.82E−08 5.84E−06 3.50E−05
Fusobacterium_varium 1.00E−03 1.97E−02 1.62E−04 6.01E−04 2.49E−03 1.31E−02
Acidaminococcus_intestini 1.06E−03 2.02E−02 1.14E−06 3.45E−06 1.99E−04 8.37E−04
Prevotella_amnii 1.28E−03 2.37E−02 6.72E−07 3.56E−06 3.56E−06 1.87E−05
Yersinia_enterocolitica 1.32E−03 2.38E−02 4.48E−08 2.69E−07 7.96E−07 4.09E−06
unclassified_Fusobacterium 1.89E−03 2.90E−02 7.79E−06 1.68E−05 4.58E−05 1.52E−04
unclassified_Prevotella_sp._oral_taxon_299 1.79E−03 2.90E−02 2.17E−08 1.18E−07 4.34E−07 1.92E−06
Anaerococcus_vaginalis 1.81E−03 2.90E−02 1.11E−06 4.26E−06 1.46E−06 2.81E−06
Shewanella_putrefaciens 1.84E−03 2.90E−02 7.68E−08 2.12E−07 3.60E−06 2.05E−05
Fusobacterium_nucleatum 2.53E−03 3.79E−02 3.40E−07 8.82E−07 3.33E−06 1.74E−05
Escherichia_sp_TW11588 3.22E−03 4.61E−02 2.76E−07 1.75E−06 1.25E−06 3.63E−06
Decreased in postmenopausal breast cancer patients
Eubacterium_eligens 1.05E−04 4.42E−03 4.02E−03 5.95E−03 1.46E−03 3.84E−03
Escherichia_albertii 7.21E−04 1.62E−02 1.28E−05 8.26E−05 9.96E−06 4.44E−05
Campylobacter_concisus 6.80E−04 1.62E−02 1.51E−05 4.24E−05 2.05E−06 4.30E−06
unclassified_Enterobacteriaceae_bacterium_9_2_54FAA 1.45E−03 2.53E−02 1.04E−05 4.38E−05 1.00E−05 1.78E−05
Roseburia_inulinivorans 1.89E−03 2.90E−02 3.69E−03 3.72E−03 2.64E−03 5.39E−03
Brucella_melitensis 3.15E−03 4.61E−02 1.83E−06 1.23E−05 5.73E−07 1.49E−06
Lactobacillus_vaginalis 3.44E−03 4.81E−02 4.32E−05 2.89E−04 7.07E−06 2.97E−05