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Table 1 Information on the 18 cohorts participating in the MiBioGen consortium to date

From: Meta-analysis of human genome-microbiome association studies: the MiBioGen consortium initiative

Cohort name

Population (ethnicity)

16S domain

Genotyping platforms used

Sample size (after QC)

Description

BSPSPC

Germany (Caucasian)

V1-V2

Illumina 550K, Immunochip, Metabochip, Affymetrix 6.0, Axiom

912

Representative of population

CARDIA

USA (Caucasian and African-American)

V3-V4

Illumina Exome, Affymetrix 6.0

282

Representative of population

NeuroIMAGE + COMPULS

Netherlands (Caucasian)

V1-V2

PsychChip (Broad Institute, Boston, USA)

153

Healthy group + ADHD group

COPSAC

Denmark (Caucasian)

V4

Illumina OmniExpressExome

424

Children (unselected)

FGFP

Belgium (Caucasian)

V4

Illumina OmniExpressExome

2482

Representative of population

FoCus

Germany (Caucasian)

V1-V2

Illumina Immunochip, Exome

1555

Representative of population + obese sub-cohort

GEM

Canada, USA, Israel (Caucasian, Israeli)

V4

Illumina HumanCoreExome, Immunochip

1543

Healthy individuals

Generation R

Netherlands (multi-ethnic)

V3-V4

Illumina 610 k

2111

Representative of population

KSCS

South Korea (Eastern Asian)

V3-V4

Illumina HumanCore BeadChips 12v

833

Representative of population

LLD

Netherlands (Caucasian)

V4

Illumina Immunochip, Cytochip

1089

Representative of population

METSIM

Finland (Caucasian)

V4

Illumina OmniExpressExome

531

Representative of population

MIBS

Netherlands (Caucasian)

V4

Illumina OmniExpressExome

111

Healthy volunteers

PNP

Israel (Israeli)

V3-V4

Illumina Metabochip

1066

Healthy volunteers

Rotterdam Study

Netherlands (Caucasian)

V3-V4

Illumina 550k

1427

Representative of population

SHIP

Germany (Caucasian)

V1-V2

Affymetrix 6.0, Illumina OmniExpressExome, Exomechip

1904

Representative of population

TwinsUK

UK (Caucasian)

V4

HumanHap300, Hap610Q, 1M-Duo, 1.2M-Duo

1793

Twins

NTR

Netherlands (Caucasian)

V4

Affymetrix 6.0

499

Twins

PopCol

Sweden

V1-V2

Illumina MiSeq

250

Representative of population

Total

   

18,965

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