From: Meta-analysis of human genome-microbiome association studies: the MiBioGen consortium initiative
Cohort name | Population (ethnicity) | 16S domain | Genotyping platforms used | Sample size (after QC) | Description |
---|---|---|---|---|---|
BSPSPC | Germany (Caucasian) | V1-V2 | Illumina 550K, Immunochip, Metabochip, Affymetrix 6.0, Axiom | 912 | Representative of population |
CARDIA | USA (Caucasian and African-American) | V3-V4 | Illumina Exome, Affymetrix 6.0 | 282 | Representative of population |
NeuroIMAGE + COMPULS | Netherlands (Caucasian) | V1-V2 | PsychChip (Broad Institute, Boston, USA) | 153 | Healthy group + ADHD group |
COPSAC | Denmark (Caucasian) | V4 | Illumina OmniExpressExome | 424 | Children (unselected) |
FGFP | Belgium (Caucasian) | V4 | Illumina OmniExpressExome | 2482 | Representative of population |
FoCus | Germany (Caucasian) | V1-V2 | Illumina Immunochip, Exome | 1555 | Representative of population + obese sub-cohort |
GEM | Canada, USA, Israel (Caucasian, Israeli) | V4 | Illumina HumanCoreExome, Immunochip | 1543 | Healthy individuals |
Generation R | Netherlands (multi-ethnic) | V3-V4 | Illumina 610Â k | 2111 | Representative of population |
KSCS | South Korea (Eastern Asian) | V3-V4 | Illumina HumanCore BeadChips 12v | 833 | Representative of population |
LLD | Netherlands (Caucasian) | V4 | Illumina Immunochip, Cytochip | 1089 | Representative of population |
METSIM | Finland (Caucasian) | V4 | Illumina OmniExpressExome | 531 | Representative of population |
MIBS | Netherlands (Caucasian) | V4 | Illumina OmniExpressExome | 111 | Healthy volunteers |
PNP | Israel (Israeli) | V3-V4 | Illumina Metabochip | 1066 | Healthy volunteers |
Rotterdam Study | Netherlands (Caucasian) | V3-V4 | Illumina 550k | 1427 | Representative of population |
SHIP | Germany (Caucasian) | V1-V2 | Affymetrix 6.0, Illumina OmniExpressExome, Exomechip | 1904 | Representative of population |
TwinsUK | UK (Caucasian) | V4 | HumanHap300, Hap610Q, 1M-Duo, 1.2M-Duo | 1793 | Twins |
NTR | Netherlands (Caucasian) | V4 | Affymetrix 6.0 | 499 | Twins |
PopCol | Sweden | V1-V2 | Illumina MiSeq | 250 | Representative of population |
Total | Â | Â | Â | 18,965 | Â |