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Table 1 Information on the 18 cohorts participating in the MiBioGen consortium to date

From: Meta-analysis of human genome-microbiome association studies: the MiBioGen consortium initiative

Cohort name Population (ethnicity) 16S domain Genotyping platforms used Sample size (after QC) Description
BSPSPC Germany (Caucasian) V1-V2 Illumina 550K, Immunochip, Metabochip, Affymetrix 6.0, Axiom 912 Representative of population
CARDIA USA (Caucasian and African-American) V3-V4 Illumina Exome, Affymetrix 6.0 282 Representative of population
NeuroIMAGE + COMPULS Netherlands (Caucasian) V1-V2 PsychChip (Broad Institute, Boston, USA) 153 Healthy group + ADHD group
COPSAC Denmark (Caucasian) V4 Illumina OmniExpressExome 424 Children (unselected)
FGFP Belgium (Caucasian) V4 Illumina OmniExpressExome 2482 Representative of population
FoCus Germany (Caucasian) V1-V2 Illumina Immunochip, Exome 1555 Representative of population + obese sub-cohort
GEM Canada, USA, Israel (Caucasian, Israeli) V4 Illumina HumanCoreExome, Immunochip 1543 Healthy individuals
Generation R Netherlands (multi-ethnic) V3-V4 Illumina 610 k 2111 Representative of population
KSCS South Korea (Eastern Asian) V3-V4 Illumina HumanCore BeadChips 12v 833 Representative of population
LLD Netherlands (Caucasian) V4 Illumina Immunochip, Cytochip 1089 Representative of population
METSIM Finland (Caucasian) V4 Illumina OmniExpressExome 531 Representative of population
MIBS Netherlands (Caucasian) V4 Illumina OmniExpressExome 111 Healthy volunteers
PNP Israel (Israeli) V3-V4 Illumina Metabochip 1066 Healthy volunteers
Rotterdam Study Netherlands (Caucasian) V3-V4 Illumina 550k 1427 Representative of population
SHIP Germany (Caucasian) V1-V2 Affymetrix 6.0, Illumina OmniExpressExome, Exomechip 1904 Representative of population
TwinsUK UK (Caucasian) V4 HumanHap300, Hap610Q, 1M-Duo, 1.2M-Duo 1793 Twins
NTR Netherlands (Caucasian) V4 Affymetrix 6.0 499 Twins
PopCol Sweden V1-V2 Illumina MiSeq 250 Representative of population
Total     18,965