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Table 1 Genome and metabolic model statistics of the selected microbes

From: Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires

   Average per taxonomic group
Taxon Number models Genome (Mbp) Genome completea Number genes Number reactions Gap-filled reactionsb
All taxa 301 3.3 95 % 702 875 3 %
 Class       
Bacilli 68 2.5 95 % 656 860 4 %
Clostridia 61 3.5 96 % 735 839 1 %
Bacteroidia 51 5.3 95 % 764 908 1 %
Actinobacteria 36 2.3 95 % 514 727 10 %
γ-Proteobacteria 25 4.6 95 % 1127 1311 1 %
 Genus       
Lactobacillus 37 2.3 96 % 597 798 4 %
Bifidobacterium 29 2.2 95 % 505 734 12 %
Bacteroides 43 5.6 96 % 774 909 1 %
  1. aBased on a selection of 107 essential genes [73]
  2. bBased on the total number of reactions in the model. Gap-filling reactions were mostly added by the Model SEED platform