| Habitual diet | Habitual diet + RS | P value |
---|---|---|---|
Phylum | |||
  Bacteroidetes | 50.5 ± 14.2 | 57.6 ± 11.9 | 0.05 |
  Firmicutes | 47.2 ± 13.4 | 39.0 ± 11.6 | 0.03 |
  Actinobacteria | 0.2 ± 0.1 | 0.7 ± 1.2 | <0.001 |
Class | |||
  Bacteroidia | 50.6 ± 14.2 | 57.7 ± 11.9 | 0.03 |
  Clostridia | 42.4 ± 13.5 | 31.7 ± 9.2 | <0.001 |
  Bacilli | 2.3 ± 3.2 | 4.3 ± 4.3 | 0.04 |
  Actinobacteria | 0.2 ± 0.1 | 0.7 ± 1.2 | 0.01 |
  Firmicutes unclassified | 0.1 ± 0.1 | 0.08 ± 0.08 | 0.02 |
Order | |||
  Bacteroidales | 50.7 ± 14.2 | 57.8 ± 11.9 | 0.05 |
  Clostridiales | 42.5 ± 13.5 | 31.7 ± 9.2 | <0.001 |
  Lactobacillales | 2.3 ± 3.2 | 4.3 ± 4.3 | 0.01 |
  Coriobacteriales | 0.1 ± 0.1 | 0.7 ± 1.2 | <0.001 |
  Bdellovibrionales | 0.1 ± 0.2 | 0.0 ± 0.2 | 0.04 |
  Enterobacteriales | 0.1 ± 0.3 | 0.8 ± 2.3 | 0.01 |
  Burkholderiales | 0.1 ± 0.1 | 0.1 ± 0.2 | 0.04 |
  Alphaproteobacteria | 0.0 ± 0.1 | 0.0 ± 0.0 | 0.03 |
  Deltaproteobacteria unclassified | 0.02 ± 0.04 | 0.0 ± 0.01 | 0.02 |
Family | |||
  Lachnospiraceae | 21.4 ± 7.4 | 12.2 ± 5.3 | <0.001 |
  Bacteroidaceae | 1.2 ± 2.3 | 0.7 ± 1.5 | 0.04 |
  Veillonellaceae | 0.7 ± 0.7 | 1.2 ± 1.1 | 0.05 |
  Acidaminococcaceae | 0.6 ± 0.6 | 0.4 ± 0.6 | 0.03 |
  Clostridiales unclassified | 0.5 ± 0.3 | 0.2 ± 0.1 | <0.001 |
  Lactobacillaceae | 0.2 ± 0.3 | 1.4 ± 2.6 | 0.04 |
  Coriobacteriaceae | 0.1 ± 0.1 | 0.7 ± 1.2 | <0.001 |
  Eubacteriaceae | 0.1 ± 0.1 | 0.06 ± 0.10 | 0.01 |
  Bdellovibrionaceae | 0.1 ± 0.2 | 0.0 ± 0.2 | 0.04 |
  Enterobacteriaceae | 0.1 ± 0.3 | 0.8 ± 2.3 | 0.01 |
  Rikenellaceae | 0.1 ± 0.2 | 0.0 ± 0.2 | 0.04 |
Genus | |||
  Lachnospiracea_incertae_sedis | 5.7 ± 2.9 | 3.5 ± 2.2 | <0.001 |
  Roseburia | 4.8 ± 3.2 | 2.6 ± 1.9 | <0.001 |
  Lachnospiraceae unclassified | 4.6 ± 2.1 | 2.2 ± 1.2 | <0.001 |
  Blautia | 3.5 ± 2.0 | 2.2 ± 1.6 | 0.03 |
  Bacteroides | 1.2 ± 2.3 | 0.7 ± 1.5 | 0.04 |
  Clostridium_XlVa | 1.1 ± 0.8 | 0.6 ± 0.5 | <0.001 |
  Coprococcus | 0.7 ± 0.5 | 0.3 ± 0.2 | <0.001 |
 Oscillibacter | 0.6 ± 0.9 | 0.3 ± 0.4 | <0.001 |
  Butyricicoccus | 0.5 ± 0.3 | 0.3 ± 0.2 | <0.001 |
  Clostridium_IV | 0.5 ± 0.7 | 0.3 ± 0.6 | 0.03 |
  Clostridium_XVIII | 0.4 ± 0.6 | 0.3 ± 0.4 | 0.02 |
 Catenibacterium | 0.3 ± 0.5 | 0.7 ± 1.0 | 0.01 |
  Lactobacillus | 0.2 ± 0.3 | 1.4 ± 2.6 | 0.04 |