Table 2 Phylotypes differential relative abundance between pregnant women who delivered preterm and at term
Phylotypes | PLME AICa,d | NBLME AICb,d | ZINBLME AICc,d | Best AICd | Estimate | Lower 95% CI | Upper 95% CI | Fold change | p-value | q-valuee |
|---|---|---|---|---|---|---|---|---|---|---|
Non-significantly different phylotypes | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
  Prevotella genogroup 3 | 6017.7 | NA | 1160.3 | ZINBLME | 2.524 | 0.341 | 4.706 | 12.5 | 0.0239 | 0.3850 |
  Dialister sp. type 2 | 3934.3 | 4142.6 | 1346.3 | ZINBLME | 1.630 | −0.002 | 3.261 | 5.1 | 0.0502 | 0.3850 |
  Sneathia sanguinegens | 2875.4 | NA | 1121.2 | ZINBLME | 1.510 | −0.033 | 3.053 | 4.5 | 0.0550 | 0.3850 |
  Parvimonas micra | 4338.8 | NA | 1242.3 | ZINBLME | 1.339 | −0.458 | 3.136 | 3.8 | 0.1422 | 0.5972 |
  Gemella | 4753.1 | NA | 1296.3 | ZINBLME | 1.327 | −0.225 | 2.879 | 3.8 | 0.0927 | 0.4867 |
  BVAB2 | 12246 | NA | 1686.4 | ZINBLME | 1.129 | −0.784 | 3.041 | 3.1 | 0.2440 | 0.7046 |
  Lactobacillus jensenii | 54150 | NA | 2859 | ZINBLME | 1.040 | −0.518 | 2.597 | 2.8 | 0.1880 | 0.6580 |
  BVAB1 | 116789 | NA | 2467.9 | ZINBLME | 0.915 | −0.976 | 2.807 | 2.5 | 0.3389 | 0.7046 |
  Megasphaera sp. type 1 | 38178 | NA | 2860.1 | ZINBLME | 0.717 | −0.864 | 2.298 | 2.0 | 0.3700 | 0.7046 |
  Dialister propionicifaciens | 3433.2 | 4330.8 | 1529.3 | ZINBLME | 0.625 | −0.738 | 1.987 | 1.9 | 0.3648 | 0.7046 |
  Lactobacillus   coleohominis | 2309.1 | NA | 1405.6 | ZINBLME | 0.550 | −0.800 | 1.899 | 1.7 | 0.4206 | 0.7046 |
  Gardnerella vaginalis | 193277 | 166894 | 4311.4 | ZINBLME | 0.520 | −0.961 | 2.000 | 1.7 | 0.4874 | 0.7046 |
  Aerococcus christensenii | 18185 | 17841 | 2505.6 | ZINBLME | 0.383 | −1.107 | 1.872 | 1.5 | 0.6108 | 0.7987 |
  Atopobium vaginae | NA | NA | 2625.8 | ZINBLME | 0.376 | −1.249 | 2.001 | 1.5 | 0.6466 | 0.7987 |
  Lactobacillus crispatus | 159892 | 125388 | 3788 | ZINBLME | 0.157 | −1.784 | 2.098 | 1.2 | 0.8724 | 0.9068 |
  Lactobacillus iners | 263630 | 194492 | 6324.8 | ZINBLME | 0.045 | −0.721 | 0.811 | 1.0 | 0.9068 | 0.9068 |
  Eggerthella | 2926.9 | NA | 1405.3 | ZINBLME | −0.189 | −1.724 | 1.345 | −1.2 | 0.8069 | 0.8918 |
  Lactobacillus vaginalis | 2682.8 | NA | 1149.1 | ZINBLME | −0.293 | −1.940 | 1.354 | −1.3 | 0.7248 | 0.8456 |
  Ureaplasma parvum | 1866.8 | NA | 1184.9 | ZINBLME | −0.374 | −1.480 | 0.732 | −1.5 | 0.5033 | 0.7046 |
  Atopobium rimae | 1386.9 | NA | 883.8 | ZINBLME | −0.522 | −1.910 | 0.865 | −1.7 | 0.4567 | 0.7046 |
  Lactobacillus gasseri | 34741 | NA | 1592.4 | ZINBLME | −0.864 | −2.847 | 1.118 | −2.4 | 0.3887 | 0.7046 |