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Table 2 Phylotypes differential relative abundance between pregnant women who delivered preterm and at term

From: The vaginal microbiota of pregnant women who subsequently have spontaneous preterm labor and delivery and those with a normal delivery at term

Phylotypes PLME AICa,d NBLME AICb,d ZINBLME AICc,d Best AICd Estimate Lower 95% CI Upper 95% CI Fold change p-value q-valuee
Non-significantly different phylotypes           
  Prevotella genogroup 3 6017.7 NA 1160.3 ZINBLME 2.524 0.341 4.706 12.5 0.0239 0.3850
  Dialister sp. type 2 3934.3 4142.6 1346.3 ZINBLME 1.630 −0.002 3.261 5.1 0.0502 0.3850
  Sneathia sanguinegens 2875.4 NA 1121.2 ZINBLME 1.510 −0.033 3.053 4.5 0.0550 0.3850
  Parvimonas micra 4338.8 NA 1242.3 ZINBLME 1.339 −0.458 3.136 3.8 0.1422 0.5972
  Gemella 4753.1 NA 1296.3 ZINBLME 1.327 −0.225 2.879 3.8 0.0927 0.4867
  BVAB2 12246 NA 1686.4 ZINBLME 1.129 −0.784 3.041 3.1 0.2440 0.7046
  Lactobacillus jensenii 54150 NA 2859 ZINBLME 1.040 −0.518 2.597 2.8 0.1880 0.6580
  BVAB1 116789 NA 2467.9 ZINBLME 0.915 −0.976 2.807 2.5 0.3389 0.7046
  Megasphaera sp. type 1 38178 NA 2860.1 ZINBLME 0.717 −0.864 2.298 2.0 0.3700 0.7046
  Dialister propionicifaciens 3433.2 4330.8 1529.3 ZINBLME 0.625 −0.738 1.987 1.9 0.3648 0.7046
  Lactobacillus   coleohominis 2309.1 NA 1405.6 ZINBLME 0.550 −0.800 1.899 1.7 0.4206 0.7046
  Gardnerella vaginalis 193277 166894 4311.4 ZINBLME 0.520 −0.961 2.000 1.7 0.4874 0.7046
  Aerococcus christensenii 18185 17841 2505.6 ZINBLME 0.383 −1.107 1.872 1.5 0.6108 0.7987
  Atopobium vaginae NA NA 2625.8 ZINBLME 0.376 −1.249 2.001 1.5 0.6466 0.7987
  Lactobacillus crispatus 159892 125388 3788 ZINBLME 0.157 −1.784 2.098 1.2 0.8724 0.9068
  Lactobacillus iners 263630 194492 6324.8 ZINBLME 0.045 −0.721 0.811 1.0 0.9068 0.9068
  Eggerthella 2926.9 NA 1405.3 ZINBLME −0.189 −1.724 1.345 −1.2 0.8069 0.8918
  Lactobacillus vaginalis 2682.8 NA 1149.1 ZINBLME −0.293 −1.940 1.354 −1.3 0.7248 0.8456
  Ureaplasma parvum 1866.8 NA 1184.9 ZINBLME −0.374 −1.480 0.732 −1.5 0.5033 0.7046
  Atopobium rimae 1386.9 NA 883.8 ZINBLME −0.522 −1.910 0.865 −1.7 0.4567 0.7046
  Lactobacillus gasseri 34741 NA 1592.4 ZINBLME −0.864 −2.847 1.118 −2.4 0.3887 0.7046
  1. aPLME: Poisson Linear Mixed Effects Model.
  2. bNBLME: Negative Binomial Linear Mixed Effects.
  3. cZINBLME: Zero-Inflated Negative Binomial Mixed-Effects Model.
  4. dAIC: Akaike Information Criterion.
  5. eq-value is p-value after adjustment for false-discovery rate (0.1).