Table 4 Genome summaries
From: Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants
Taxa | Bin no. | bp | Contigs | N50 | % GC | Cvg | % SCG |
|---|---|---|---|---|---|---|---|
Infant 1: | |||||||
Bacteroides fragilis | 6 | 4,551,095 | 39 | 249,654 | 43.3 | 1,930.3 | 99 |
Bacteroides phage1 | 4 | 205,842 | 1 | 205,842 | 41.9 | 2,221.4 | 0 |
Bacteroides phage2 | 5 | 144,903 | 1 | 144,903 | 42.0 | 2,060.8 | 0 |
Enterococcus faecalis | 8 | 2,649,897 | 93 | 40,945 | 37.8 | 7.6 | 99 |
Clostridium ramosum | 7 | 3,630,043 | 63 | 78,436 | 31.4 | 23.5 | 99 |
Escherichia coli | 3 | 5,035,302 | 53 | 218,574 | 50.5 | 1,254.1 | 57 |
Klebsiella pneumoniae | 1 | 5,447,442 | 78 | 189,741 | 57.3 | 345.0 | 37 |
Staphylococcus epidermidis plasmid | 2 | 20,739 | 2 | 11,095 | 31.5 | 14.5 | 0 |
Infant 2: | |||||||
Actinomyces neuii strain 1 | 18 | 1,580,717 | 37 | 280,583 | 56.9 | 15.6 | 27 |
Actinomyces neuii strain 2 | 24 | 2,375,188 | 27 | 179,095 | 56.7 | 17.6 | 70 |
Actinomyces sp. | 6 | 2,666,449 | 11 | 345,356 | 59.3 | 55.4 | 99 |
Anaerococcus prevotii | 1 | 1,599,845 | 13 | 225,571 | 33.1 | 39.2 | 99 |
Caudovirales bacteriophage | 26 | 18,308 | 1 | 18,308 | 29.5 | 1,169.7 | 0 |
Dermabacter sp. | 4 | 2,040,279 | 12 | 289,797 | 62.8 | 51.9 | 90 |
Enterococcus faecalis | 9 | 3,011,019 | 26 | 499,183 | 37.1 | 147.3 | 99 |
Enterococcus faecalis phage | 14 | 335,286 | 39 | 12,896 | 34.8 | 103.7 | 0 |
Enterococcus faecalis plasmid | 22 | 8,514 | 2 | 4,866 | 30.4 | 90.6 | 0 |
Finegoldia magna | 7 | 1,729,913 | 42 | 78,482 | 32.0 | 93.0 | 99 |
Finegoldia phage | 25 | 3,168 | 1 | 3,168 | 32.3 | 138.5 | 0 |
Finegoldia plasmid 1 | 23 | 7,589 | 2 | 3,969 | 33.0 | 103.4 | 0 |
Finegoldia plasmid 2 | 21 | 28,958 | 3 | 15,674 | 55.4 | 10.9 | 0 |
Pseudomonas aeruginosa | 5 | 6,755,599 | 64 | 212,603 | 66.0 | 51.5 | 99 |
Staphylococcus epidermidis | 10 | 1,902,759 | 82 | 40,484 | 33.0 | 65.4 | 7 |
Staphylococcus epidermidis mobile | 17 | 55,503 | 10 | 6,452 | 31.7 | 54.5 | 43 |
Staphylococcus epidermidis phage 2 | 11 | 19,082 | 2 | 12,983 | 29.4 | 84.3 | 0 |
Staphylococcus epidermidis strain | 3 | 81,754 | 9 | 14,965 | 29.4 | 67.1 | 0 |
Staphylococcus phage 1 | 13 | 216,785 | 13 | 8,080 | 29.5 | 45.7 | 0 |
Staphylococcus phage 2 | 16 | 198,742 | 14 | 20,782 | 0.3 | 79.3 | 0 |
Staphylococcus phage 3 and plasmid | 15 | 137,609 | 12 | 19,343 | 29.3 | 67.8 | 0 |
Staphylococcus warneri | 8 | 2,363,750 | 22 | 198,467 | 32.8 | 33.9 | 53 |
Veillonella sp. | 2 | 2,281,484 | 223 | 12,637 | 37.8 | 56.2 | 70 |