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  1. Bariatric surgery remains the most effective therapy for adiposity reduction and remission of type 2 diabetes. Although different bariatric procedures associate with pronounced shifts in the gut microbiota, th...

    Authors: Julia Münzker, Nadine Haase, Andreas Till, Robert Sucher, Sven-Bastiaan Haange, Linda Nemetschke, Thorsten Gnad, Elisabeth Jäger, Jiesi Chen, Sjaak J. Riede, Rima Chakaroun, Lucas Massier, Peter Kovacs, Mario Ost, Ulrike Rolle-Kampczyk, Nico Jehmlich…
    Citation: Microbiome 2022 10:96
    Content type: Research Published on:

  2. Pronounced heterogeneity of age trajectories has been identified as a hallmark of the gut microbiota in humans and has been explained by marked changes in lifestyle and health condition. Comparatively, age-rel...

    Authors: Baptiste Sadoughi, Dominik Schneider, Rolf Daniel, Oliver Schülke and Julia Ostner
    Citation: Microbiome 2022 10:95
    Content type: Research Published on:

  3. The gut microbiota is reportedly involved in the progression and chemoresistance of various human malignancies. However, the underlying mechanisms behind how it exerts some effect on prostate cancer, as an ext...

    Authors: Weibo Zhong, Kaihui Wu, Zining Long, Xumin Zhou, Chuanfan Zhong, Shuo Wang, Houhua Lai, Yufei Guo, Daojun Lv, Jianming Lu and Xiangming Mao
    Citation: Microbiome 2022 10:94
    Content type: Research Published on:

  4. Pancreatic cancer is a deadly disease with limited diagnostic and treatment options. Not all populations are affected equally, as disparities exist in pancreatic cancer prevalence, treatment and outcomes. Rece...

    Authors: Kelly M. Herremans, Andrea N. Riner, Miles E. Cameron, Kelley L. McKinley, Eric W. Triplett, Steven J. Hughes and Jose G. Trevino
    Citation: Microbiome 2022 10:93
    Content type: Review Published on:

  5. Prokaryote-virus interactions play key roles in driving biogeochemical cycles. However, little is known about the drivers shaping their interaction network structures, especially from the host features. Here, ...

    Authors: Zhenghua Liu, Qingyun Yan, Chengying Jiang, Juan Li, Huahua Jian, Lu Fan, Rui Zhang, Xiang Xiao, Delong Meng, Xueduan Liu, Jianjun Wang and Huaqun Yin
    Citation: Microbiome 2022 10:92
    Content type: Research Published on:

  6. Innate immunity genes have been reported to affect susceptibility to inflammatory bowel diseases (IBDs) and colitis in mice. Dectin-1, a receptor for fungal cell wall β-glucans, has been clearly implicated in ...

    Authors: Yazhou Wang, Madeleine Spatz, Gregory Da Costa, Chloé Michaudel, Alexia Lapiere, Camille Danne, Allison Agus, Marie-Laure Michel, Mihai G. Netea, Philippe Langella, Harry Sokol and Mathias L. Richard
    Citation: Microbiome 2022 10:91
    Content type: Research Published on:

  7. The Scarabaeidae insect Protaetia brevitarsis (PB) has recently gained increasing research interest as a resource insect because its larvae can effectively convert decaying organic matter to plant growth-promotin...

    Authors: Kui Wang, Peiwen Gao, Lili Geng, Chunqin Liu, Jie Zhang and Changlong Shu
    Citation: Microbiome 2022 10:90
    Content type: Research Published on:

  8. Haematopoietic stem cell transplantation is a curative procedure for a variety of conditions. Despite major advances, a plethora of adverse clinical outcomes can develop post-transplantation including graft-ve...

    Authors: Gintare Vaitkute, Gordana Panic, Dagmar G. Alber, Intan Faizura-Yeop, Elaine Cloutman-Green, Jonathan Swann, Paul Veys, Joseph F. Standing, Nigel Klein and Mona Bajaj-Elliott
    Citation: Microbiome 2022 10:89
    Content type: Research Published on:

  10. Clostridioides difficile infection (CDI) is the most common hospital acquired infection in the USA, with recurrence rates > 15%. Although primary CDI has been extensively linked to gut microbial dysbiosis, less i...

    Authors: Jennifer J. Dawkins, Jessica R. Allegretti, Travis E. Gibson, Emma McClure, Mary Delaney, Lynn Bry and Georg K. Gerber
    Citation: Microbiome 2022 10:87
    Content type: Research Published on:

  11. The relationship between host conditions and microbiome profiles, typically characterized by operational taxonomic units (OTUs), contains important information about the microbial role in human health. Traditi...

    Authors: Caizhi Huang, Benjamin J. Callahan, Michael C. Wu, Shannon T. Holloway, Hayden Brochu, Wenbin Lu, Xinxia Peng and Jung-Ying Tzeng
    Citation: Microbiome 2022 10:86
    Content type: Methodology Published on:

  12. The interaction of organisms with their surrounding microbial communities influences many biological processes, a notable example of which is the shaping of the immune system in early life. In the Pacific oyst...

    Authors: Manon Fallet, Caroline Montagnani, Bruno Petton, Luc Dantan, Julien de Lorgeril, Sébastien Comarmond, Cristian Chaparro, Eve Toulza, Simon Boitard, Jean-Michel Escoubas, Agnès Vergnes, Jacqueline Le Grand, Ingo Bulla, Yannick Gueguen, Jérémie Vidal-Dupiol, Christoph Grunau…
    Citation: Microbiome 2022 10:85
    Content type: Research Published on:

  13. The increased use of metagenomics and single-cell genomics led to the discovery of organisms from phyla with no cultivated representatives and proposed new microbial lineages such as the candidate phyla radiat...

    Authors: Maria-Cecilia Chiriac, Paul-Adrian Bulzu, Adrian-Stefan Andrei, Yusuke Okazaki, Shin-ichi Nakano, Markus Haber, Vinicius Silva Kavagutti, Paul Layoun, Rohit Ghai and Michaela M. Salcher
    Citation: Microbiome 2022 10:84
    Content type: Research Published on:

  14. In modern animal husbandry, breeders pay increasing attention to improving sow nutrition during pregnancy and lactation to favor the health of neonates. Sow milk is a main food source for piglets during their ...

    Authors: Leli Wang, Qihang Liu, Yuwei Chen, Xinlei Zheng, Chuni Wang, Yining Qi, Yachao Dong, Yue Xiao, Cang Chen, Taohong Chen, Qiuyun Huang, Zongzhao Zhai, Cimin Long, Huansheng Yang, Jianzhong Li, Lei Wang…
    Citation: Microbiome 2022 10:83
    Content type: Research Published on:

  15. Gut microbiota plays important roles in health maintenance and diseases. Physical exercise has been demonstrated to be able to modulate gut microbiota. However, the potential role of gut microbiome in exercise...

    Authors: Qiulian Zhou, Jiali Deng, Xue Pan, Danni Meng, Yujiao Zhu, Yuzheng Bai, Chao Shi, Yi Duan, Tianhui Wang, Xinli Li, Joost PG Sluijter and Junjie Xiao
    Citation: Microbiome 2022 10:82
    Content type: Research Published on:

  17. Novel strategies for anaerobic bacterial isolations from human faecal samples and various initiatives to generate culture collections of gut-derived bacteria have instigated considerable interest for the devel...

    Authors: Anaïs Biclot, Geert R. B. Huys, Rodrigo Bacigalupe, Kevin D’hoe, Doris Vandeputte, Gwen Falony, Raul Y. Tito and Jeroen Raes
    Citation: Microbiome 2022 10:80
    Content type: Research Published on:

  18. Antimicrobials are often used to prevent and treat diarrhea induced by enteroaggregative Escherichia coli (EAEC) in young ruminants. However, drug overuse or misuse accelerates the spread of multidrug-resistant e...

    Authors: Zhiyuan He, Yulin Ma, Sirui Yang, Shuyuan Zhang, Shuai Liu, Jianxin Xiao, Yajing Wang, Wei Wang, Hongjian Yang, Shengli Li and Zhijun Cao
    Citation: Microbiome 2022 10:79
    Content type: Research Published on:

  19. Termites primarily feed on lignocellulose or soil in association with specific gut microbes. The functioning of the termite gut microbiota is partly understood in a handful of wood-feeding pest species but rem...

    Authors: Jigyasa Arora, Yukihiro Kinjo, Jan Šobotník, Aleš Buček, Crystal Clitheroe, Petr Stiblik, Yves Roisin, Lucia Žifčáková, Yung Chul Park, Ki Yoon Kim, David Sillam-Dussès, Vincent Hervé, Nathan Lo, Gaku Tokuda, Andreas Brune and Thomas Bourguignon
    Citation: Microbiome 2022 10:78
    Content type: Research Published on:

  20. Dietary fiber is an integral part of a healthy diet, but questions remain about the mechanisms that underlie effects and the causal contributions of the gut microbiota. Here, we performed a 6-week exploratory ...

    Authors: Edward C. Deehan, Zhengxiao Zhang, Alessandra Riva, Anissa M. Armet, Maria Elisa Perez-Muñoz, Nguyen K. Nguyen, Jacqueline A. Krysa, Benjamin Seethaler, Yuan-Yuan Zhao, Janis Cole, Fuyong Li, Bela Hausmann, Andreas Spittler, Julie-Anne Nazare, Nathalie M. Delzenne, Jonathan M. Curtis…
    Citation: Microbiome 2022 10:77
    Content type: Research Published on:

  21. Although there is now an extensive understanding of the diversity of microbial life on earth through culture-independent metagenomic DNA sequence analyses, the isolation and cultivation of microbes remains cri...

    Authors: Sijia Liu, Christina D. Moon, Nan Zheng, Sharon Huws, Shengguo Zhao and Jiaqi Wang
    Citation: Microbiome 2022 10:76
    Content type: Review Published on:

  22. The deep sea harbors the majority of the microbial biomass in the ocean and is a key site for organic matter (OM) remineralization and storage in the biosphere. Microbial metabolism in the deep ocean is greatl...

    Authors: Rulong Liu, Xing Wei, Weizhi Song, Li Wang, Junwei Cao, Jiaxin Wu, Torsten Thomas, Tao Jin, Zixuan Wang, Wenxia Wei, Yuli Wei, Haofeng Zhai, Cheng Yao, Ziyi Shen, Jiangtao Du and Jiasong Fang
    Citation: Microbiome 2022 10:75
    Content type: Research Published on:

  24. The global pork industry is continuously affected by infectious diseases that can result in large-scale mortality, trade restrictions, and major reductions in production. Nevertheless, the cause of many infect...

    Authors: Xinyi Huang, Weichen Wu, Xiaoxiao Tian, Xin Hou, Xingyang Cui, Yihong Xiao, Qiulin Jiao, Pei Zhou, Liqiang Liu, Weilin Shi, Ligong Chen, Yue Sun, Yongbo Yang, Jianxin Chen, Guihong Zhang, Jinling Liu…
    Citation: Microbiome 2022 10:73
    Content type: Research Published on:

  28. The spread of antibiotic resistance genes (ARGs) has been of global concern as one of the greatest environmental threats. The gut microbiome of animals has been found to be a large reservoir of ARGs, which is ...

    Authors: Huihui Sun, Xiaohuan Mu, Kexun Zhang, Haoyu Lang, Qinzhi Su, Xingan Li, Xin Zhou, Xue Zhang and Hao Zheng
    Citation: Microbiome 2022 10:69
    Content type: Research Published on:

  29. Altered intestinal microbiota composition in later life is associated with inflammaging, declining tissue function, and increased susceptibility to age-associated chronic diseases, including neurodegenerative ...

    Authors: Aimée Parker, Stefano Romano, Rebecca Ansorge, Asmaa Aboelnour, Gwenaelle Le Gall, George M. Savva, Matthew G. Pontifex, Andrea Telatin, David Baker, Emily Jones, David Vauzour, Steven Rudder, L. Ashley Blackshaw, Glen Jeffery and Simon R. Carding
    Citation: Microbiome 2022 10:68
    Content type: Research Published on:

  30. Phytoplankton communities significantly contribute to global biogeochemical cycles of elements and underpin marine food webs. Although their uncultured genomic diversity has been estimated by planetary-scale m...

    Authors: Anthony Duncan, Kerrie Barry, Chris Daum, Emiley Eloe-Fadrosh, Simon Roux, Katrin Schmidt, Susannah G. Tringe, Klaus U. Valentin, Neha Varghese, Asaf Salamov, Igor V. Grigoriev, Richard M. Leggett, Vincent Moulton and Thomas Mock
    Citation: Microbiome 2022 10:67
    Content type: Research Published on:

  31. The virome of lung transplant recipients (LTRs) under immunosuppressive therapy is dominated by non-pathogenic Anelloviridae and further includes several pathogenic viruses such as Herpesviruses or respiratory vi...

    Authors: Stefanie Widder, Irene Görzer, Benjamin Friedel, Nina Rahimi, Stefan Schwarz, Peter Jaksch, Sylvia Knapp and Elisabeth Puchhammer-Stöckl
    Citation: Microbiome 2022 10:66
    Content type: Research Published on:

    The Correction to this article has been published in Microbiome 2022 10:81

  32. Critically ill 2019 coronavirus disease (COVID-19) patients under invasive mechanical ventilation (IMV) are 10 to 40 times more likely to die than the general population. Although progression from mild to seve...

    Authors: Jairo R. Temerozo, Natalia Fintelman-Rodrigues, Monique Cristina dos Santos, Eugenio D. Hottz, Carolina Q. Sacramento, Aline de Paula Dias da Silva, Samuel Coelho Mandacaru, Emilly Caroline dos Santos Moraes, Monique R. O. Trugilho, João S. M. Gesto, Marcelo Alves Ferreira, Felipe Betoni Saraiva, Lohanna Palhinha, Remy Martins-Gonçalves, Isaclaudia Gomes Azevedo-Quintanilha, Juliana L. Abrantes…
    Citation: Microbiome 2022 10:65
    Content type: Research Published on:

  33. Recent evidence implicates microbial sulfidogenesis as a potential trigger of colorectal cancer (CRC), highlighting the need for comprehensive knowledge of sulfur metabolism within the human gut. Microbial sul...

    Authors: Patricia G. Wolf, Elise S. Cowley, Adam Breister, Sarah Matatov, Luke Lucio, Paige Polak, Jason M. Ridlon, H. Rex Gaskins and Karthik Anantharaman
    Citation: Microbiome 2022 10:64
    Content type: Research Published on:

  34. It is worrisome that several pollutants can enhance the abundance of antibiotic resistance genes (ARGs) in the environment, including agricultural fungicides. As an important bioindicator for environmental ris...

    Authors: Jiajin Song, Tongxin Li, Zhiruo Zheng, Wenjie Fu, Zhengnan Long, Nan Shi, Yuling Han, Luqing Zhang, Yunlong Yu and Hua Fang
    Citation: Microbiome 2022 10:63
    Content type: Research Published on:

  35. Chronic cerebral hypoperfusion (CCH) underlies secondary brain injury following certain metabolic disorders and central nervous system (CNS) diseases. Dysregulation of the microbiota-gut-brain axis can exacerb...

    Authors: Weiping Xiao, Jiabin Su, Xinjie Gao, Heng Yang, Ruiyuan Weng, Wei Ni and Yuxiang Gu
    Citation: Microbiome 2022 10:62
    Content type: Research Published on:

    The Correction to this article has been published in Microbiome 2022 10:70

  36. Access to antiretroviral therapy (ART) during pregnancy and breastfeeding for mothers with HIV has resulted in fewer children acquiring HIV peri- and postnatally, resulting in an increase in the number of chil...

    Authors: Silvia Grant-Beurmann, Jibreel Jumare, Nicaise Ndembi, Olayemi Matthew, Ashley Shutt, Augustine Omoigberale, Olivia A. Martin, Claire M. Fraser and Man Charurat
    Citation: Microbiome 2022 10:61
    Content type: Research Published on:

  37. Wild birds may harbor and transmit viruses that are potentially pathogenic to humans, domestic animals, and other wildlife.

    Authors: Tongling Shan, Shixing Yang, Haoning Wang, Hao Wang, Ju Zhang, Ga Gong, Yuqing Xiao, Jie Yang, Xiaolong Wang, Juan Lu, Min Zhao, Zijun Yang, Xiang Lu, Ziyuan Dai, Yumin He, Xu Chen…
    Citation: Microbiome 2022 10:60
    Content type: Research Published on:

  38. The potential role of the gut microbiome as a predictor of immune-mediated HIV-1 control in the absence of antiretroviral therapy (ART) is still unknown. In the BCN02 clinical trial, which combined the MVA.HIV...

    Authors: Alessandra Borgognone, Marc Noguera-Julian, Bruna Oriol, Laura Noël-Romas, Marta Ruiz-Riol, Yolanda Guillén, Mariona Parera, Maria Casadellà, Clara Duran, Maria C. Puertas, Francesc Català-Moll, Marlon De Leon, Samantha Knodel, Kenzie Birse, Christian Manzardo, José M. Miró…
    Citation: Microbiome 2022 10:59
    Content type: Research Published on:

  40. Caloric restriction can delay the development of metabolic diseases ranging from insulin resistance to type 2 diabetes and is linked to both changes in the composition and metabolic function of the gut microbi...

    Authors: Julia Sbierski-Kind, Sophia Grenkowitz, Stephan Schlickeiser, Arvid Sandforth, Marie Friedrich, Désirée Kunkel, Rainer Glauben, Sebastian Brachs, Knut Mai, Andrea Thürmer, Aleksandar Radonić, Oliver Drechsel, Peter J. Turnbaugh, Jordan E. Bisanz, Hans-Dieter Volk, Joachim Spranger…
    Citation: Microbiome 2022 10:57
    Content type: Research Published on:

  41. Plants can recruit beneficial microbes to enhance their ability to defend against pathogens. However, in contrast to the intensively studied roles of the rhizosphere microbiome in suppressing plant pathogens, ...

    Authors: Pu-Dong Li, Zeng-Rong Zhu, Yunzeng Zhang, Jianping Xu, Hongkai Wang, Zhengyi Wang and Hongye Li
    Citation: Microbiome 2022 10:56
    Content type: Research Published on:

  44. The understanding of how microbiomes assemble, function, and evolve requires metagenomic tools that can resolve microbiota compositions at the strain level. However, the identification and tracking of microbia...

    Authors: Daniel Podlesny, Cesar Arze, Elisabeth Dörner, Sandeep Verma, Sudhir Dutta, Jens Walter and W. Florian Fricke
    Citation: Microbiome 2022 10:53
    Content type: Research Published on:

  45. The ability to quantitatively predict ecophysiological functions of microbial communities provides an important step to engineer microbiota for desired functions related to specific biochemical conversions. He...

    Authors: Bin Liu, Heike Sträuber, João Saraiva, Hauke Harms, Sandra Godinho Silva, Jonas Coelho Kasmanas, Sabine Kleinsteuber and Ulisses Nunes da Rocha
    Citation: Microbiome 2022 10:48
    Content type: Research Published on:

  46. Elucidating the spatial structure of host-associated microbial communities is essential for understanding taxon-taxon interactions within the microbiota and between microbiota and host. Macroalgae are colonize...

    Authors: S. Tabita Ramírez-Puebla, Brooke L. Weigel, Loretha Jack, Cathleen Schlundt, Catherine A. Pfister and Jessica L. Mark Welch
    Citation: Microbiome 2022 10:52
    Content type: Research Published on:

  47. Cryoconite granules are mineral–microbial aggregates found on glacier surfaces worldwide and are hotspots of biogeochemical reactions in glacier ecosystems. However, despite their importance within glacier eco...

    Authors: Takumi Murakami, Nozomu Takeuchi, Hiroshi Mori, Yuu Hirose, Arwyn Edwards, Tristram Irvine-Fynn, Zhongqin Li, Satoshi Ishii and Takahiro Segawa
    Citation: Microbiome 2022 10:50
    Content type: Research Published on:

  49. Microbes and their viruses are hidden engines driving Earth’s ecosystems from the oceans and soils to humans and bioreactors. Though gene marker approaches can now be complemented by genome-resolved studies of...

    Authors: Ann C. Gregory, Kenji Gerhardt, Zhi-Ping Zhong, Benjamin Bolduc, Ben Temperton, Konstantinos T. Konstantinidis and Matthew B. Sullivan
    Citation: Microbiome 2022 10:49
    Content type: Software article Published on:

  50. The gut microbiota can affect neurologic disease by shaping microglia, the primary immune cell in the central nervous system (CNS). While antibiotics improve models of Alzheimer’s disease, Parkinson’s disease,...

    Authors: Laura M. Cox, Narghes Calcagno, Christian Gauthier, Charlotte Madore, Oleg Butovsky and Howard L. Weiner
    Citation: Microbiome 2022 10:47
    Content type: Short report Published on:
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