Fig. 5

Active prophages of the OMM¹² mice. a RPKM counts for the induced OMM¹² prophages, for the different virome samples (Methods). Virome sequencing was performed for two fecal pellets of two mice in 2019 and 2020. The reads obtained were mapped on the 12 OMM.¹² strains, and the resulting normalized sequencing depth is represented. Stars aside from prophages name under the graph indicate phages described by Zünd et al. The dashed red line indicates the induction threshold. b Genetic map of the 13 induced prophages. Prophages were grouped by host. Genes were colored based on predicted functions (Methods)