Fig. 4

Contact maps and prophage regions in OMM¹² bacteria. a, b Contact map of F. plautii and A. muris. The contact map is shown (5 kb resolution) on top, while additional information (localization of parS sites, putative prophage regions, coverage, GC content, GC skew, and genomic coordinates) is shown on the bottom. A zoom of the contact maps is visible on one putative prophage region per bacteria (2 kb resolution), with the associated coverage. Prophages are visible as red squares. Hi-C signal prediction is indicated in dashed lines. c Contact matrices (5 kb resolution) and associated coverage of B. caecimuris for in vitro and in vivo Hi-C matrices. The region corresponding to the induced prophages is highlighted in grey. d Zoomed contact matrix, centered around the induced prophage of B. caecimuris (2 kb resolution). The circularization signal is highlighted by a black arrow. The depleted region of the phage is visible in the middle of the square formed by the prophage