Fig. 3

The CBA/J database (CBAJ-DB) genomes are representative key members in amplicon microbiome data. A Class distribution of dereplicated MQHQ (dMQHQ) metagenome assembled genome (MAG) relative abundance across individual metagenomes (U# = uninfected, I# = infected) labeled by treatment. B Linear discriminant analysis Effect Size (LEfSe) scores of most important genera in either treatment in metagenomes, including genera LEfSe linear discriminant analysis (LDA) scores for amplicon sequencing variants (ASVs) with matching taxonomy. C Rank abundance of dMQHQ MAGs (n = 113) showing mean relative abundance (RA) in uninfected (green) and infected (brown) treatments (TRT). Circles below bars highlight LDA significant species (black) and genera (gray) (top row) and treatment origin of each MAG (bottom row). MAGs are labeled with the most resolved GTDB-Tk taxonomy