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Table 2 Blastn analyses of contigs derived from IL-10 − / − lactoserum showing the top two significant alignments

From: Mouse mammary tumor virus is implicated in severity of colitis and dysbiosis in the IL-10−/− mouse model of inflammatory bowel disease

 

Length (BP)

Description

Genomic region

Coverage

Identity

Accession number

Scaffold 1

4740

Endogenous MMTV Mtv1

gag/pro/pol env saga

100%

97.34%

AF228550.1

  

Exogenous MMTV HeJ

 

100%

97.22%

AF228551.1

Scaffold 2

2923

Endogenous MMTV Mtv1

gag/pro/pol

100%

97.57%

AF228550.1

  

Exogenous MMTV HeJ

 

100%

97.47%

AF228551.1

Scaffold 3

4740

Endogenous MMTV Mtv1

gag/pro/pol env

100%

96.52%

AF228550.1

  

Exogenous MMTV HeJ

 

100%

96.39%

AF228551.1

Scaffold 4

3591

Exogenous MMTV HeJ

env saga

97%

96.82%

AF228551.1

  

Endogenous MMTV Mtv1

 

97%

96.82%

AF228550.1

Scaffold 5

2999

Endogenous MMTV Mtv1

pro/pol env

100%

97.60%

AF228550.1

  

Exogenous MMTV HeJ

 

100%

97.50%

AF228551.1

Scaffold 6

907

MMTV LTR DNA

sag LTRb

100%

95.49%

L37517.1

  

Endogenous MMTV Mtv1

 

100%

95.38%

AF228550.1

Scaffold 7

1041

MMTV LTR DNA

sag LTRb

100%

95.78%

L37517.1

  

Endogenous MMTV Mtv1

 

100%

95.69%

AF228550.1

Scaffold 8

907

MMTV LTR DNA

sag LTRb

100%

95.93%

L37517.1

  

Endogenous MMTV Mtv1

 

100%

95.82%

AF228550.1

Scaffold 9

569

MMTV LTR DNA

LTR

86%

99.15%

L37517.1

  

Mtv17 LTR

 

86%

99.15%

AY033511.1

  1. Specific Blastn search MMTV sag gene alignment: amtv-17, bmtv-3